Wall clock time and date at job start Sun Mar 29 2020 22:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.55887 * 2 1 4 4 C 1.53075 * 117.51334 * 214.29415 * 2 1 3 5 5 C 1.52997 * 117.49631 * 145.68527 * 2 1 3 6 6 C 1.50698 * 117.50237 * 0.02562 * 5 2 1 7 7 O 1.20821 * 119.99777 * 333.26533 * 6 5 2 8 8 O 1.34227 * 120.00065 * 153.26101 * 6 5 2 9 9 C 1.50704 * 117.49638 * 215.00030 * 5 2 1 10 10 O 1.21289 * 120.00365 * 259.24855 * 9 5 2 11 11 N 1.34781 * 119.99756 * 79.25219 * 9 5 2 12 12 C 1.46506 * 119.99652 * 354.69143 * 11 9 5 13 13 C 1.37100 * 119.99993 * 174.69208 * 11 9 5 14 14 H 1.07997 * 119.99983 * 354.80612 * 13 11 9 15 15 C 1.38950 * 119.99788 * 174.80982 * 13 11 9 16 16 N 1.31414 * 120.00038 * 6.79989 * 15 13 11 17 17 Si 1.86800 * 119.99822 * 186.79826 * 15 13 11 18 18 H 1.48500 * 109.47213 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47131 * 119.99872 * 17 15 13 20 20 H 1.48498 * 109.47278 * 240.00113 * 17 15 13 21 21 H 1.08999 * 109.47230 * 274.31437 * 1 2 3 22 22 H 1.09001 * 109.46963 * 34.31443 * 1 2 3 23 23 H 1.08999 * 109.47016 * 154.31342 * 1 2 3 24 24 H 1.09000 * 117.48853 * 145.03546 * 4 2 1 25 25 H 1.08997 * 117.53417 * 359.97438 * 4 2 1 26 26 H 0.96699 * 117.00402 * 174.96772 * 8 6 5 27 27 H 1.08996 * 109.47561 * 354.38529 * 12 11 9 28 28 H 1.09002 * 109.46740 * 114.39110 * 12 11 9 29 29 H 1.08999 * 109.46749 * 234.38461 * 12 11 9 30 30 H 0.96999 * 119.99790 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 1.3720 -2.1409 1.4605 7 8 0.2599 -1.8418 1.8257 8 8 1.8376 -3.3815 1.6740 9 6 3.5290 -0.7809 1.4613 10 8 4.5887 -1.0797 0.9526 11 7 3.5074 -0.1447 2.6494 12 6 2.2353 0.3195 3.2086 13 6 4.6757 0.0679 3.3345 14 1 5.6017 -0.3468 2.9646 15 6 4.6684 0.8169 4.5048 16 7 3.5278 1.2083 5.0272 17 14 6.2797 1.2674 5.3354 18 1 7.4125 0.7108 4.5531 19 1 6.4050 2.7456 5.4038 20 1 6.3026 0.7046 6.7094 21 1 -0.3633 0.0773 1.0247 22 1 -0.3633 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4454 24 1 3.1724 -0.8756 -1.2679 25 1 1.6127 -1.8599 -1.2680 26 1 1.2774 -3.9781 2.1891 27 1 1.4377 0.1526 2.4848 28 1 2.0176 -0.2322 4.1231 29 1 2.3044 1.3837 3.4340 30 1 3.5227 1.7315 5.8440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605018520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:53 Heat of formation + Delta-G solvation = -82.541088 kcal Electronic energy + Delta-G solvation = -16510.171140 eV Core-core repulsion = 13693.356494 eV Total energy + Delta-G solvation = -2816.814646 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53549 -38.44027 -36.53714 -35.56994 -34.63359 -31.57483 -28.68445 -26.59807 -25.23703 -24.16559 -21.82680 -20.35031 -19.02304 -17.69262 -17.03249 -16.54052 -15.58599 -15.03249 -14.52029 -14.12254 -13.97563 -13.44706 -13.22304 -12.77837 -12.38110 -12.10723 -11.68999 -11.57061 -11.27139 -11.22968 -11.03725 -10.74255 -10.53492 -10.36349 -10.25708 -9.85719 -9.64486 -9.07410 -8.47676 -7.93771 -6.29251 -3.86521 2.43796 3.08468 3.22007 3.25068 3.29674 3.56355 3.99174 4.16510 4.63618 4.91316 5.09734 5.25376 5.38066 5.52457 5.66037 5.90645 5.96278 6.06246 6.21554 6.27800 6.48374 6.60523 6.82073 7.09282 7.41235 7.53517 7.98731 8.23491 8.41944 9.10868 9.36469 9.89147 10.63104 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.009033 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.133401 B = 3099.081681 C = 3189.323532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 H 0.119 0.881 4 C -0.127 4.127 5 C -0.144 4.144 6 C 0.529 3.471 7 O -0.509 6.509 8 O -0.505 6.505 9 C 0.471 3.529 10 O -0.582 6.582 11 N -0.433 5.433 12 C 0.104 3.896 13 C -0.301 4.301 14 H 0.107 0.893 15 C 0.027 3.973 16 N -0.881 5.881 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.281 1.281 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.405 0.595 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 -2.508 -5.629 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.128 4.128 3 H 0.137 0.863 4 C -0.165 4.165 5 C -0.149 4.149 6 C 0.371 3.629 7 O -0.397 6.397 8 O -0.316 6.316 9 C 0.257 3.743 10 O -0.467 6.467 11 N -0.150 5.150 12 C -0.039 4.039 13 C -0.428 4.428 14 H 0.125 0.875 15 C -0.175 4.175 16 N -0.522 5.522 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.207 1.207 21 H 0.099 0.901 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.132 0.868 25 H 0.118 0.882 26 H 0.263 0.737 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.885 -2.182 -5.798 8.545 hybrid contribution 0.224 -0.199 1.085 1.126 sum -5.661 -2.381 -4.713 7.741 Atomic orbital electron populations 1.21490 0.91674 1.01143 1.03467 1.22603 0.95936 0.94409 0.99843 0.86311 1.23200 1.03149 1.00397 0.89723 1.20943 0.98621 0.99227 0.96103 1.22001 0.84518 0.80842 0.75498 1.90655 1.20846 1.79360 1.48806 1.84608 1.53522 1.24023 1.69411 1.18241 0.87041 0.85741 0.83283 1.90520 1.30598 1.59381 1.66227 1.43708 1.08070 1.47509 1.15715 1.22005 0.82943 1.02752 0.96223 1.19911 0.87659 1.30618 1.04633 0.87520 1.25385 0.98902 0.96381 0.96838 1.70210 1.24365 1.37007 1.20590 0.85750 0.81271 0.78319 0.78741 1.19083 1.20499 1.20657 0.90142 0.92348 0.92950 0.86784 0.88212 0.73724 0.94707 0.92767 0.89479 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 8.52 37.16 0.32 -1.41 16 2 C -0.11 -1.80 5.16 -90.58 -0.47 -2.27 16 3 H 0.12 1.97 8.14 -51.93 -0.42 1.54 16 4 C -0.13 -2.07 9.41 -26.69 -0.25 -2.32 16 5 C -0.14 -2.87 1.26 -156.81 -0.20 -3.07 16 6 C 0.53 10.01 6.59 36.00 0.24 10.25 16 7 O -0.51 -9.67 13.89 -18.75 -0.26 -9.93 16 8 O -0.51 -8.54 13.42 -39.25 -0.53 -9.07 16 9 C 0.47 11.86 6.87 -10.98 -0.08 11.78 16 10 O -0.58 -16.40 16.32 5.55 0.09 -16.31 16 11 N -0.43 -11.47 3.03 -122.19 -0.37 -11.84 16 12 C 0.10 2.51 8.42 59.85 0.50 3.02 16 13 C -0.30 -8.47 9.55 -14.93 -0.14 -8.61 16 14 H 0.11 3.13 7.20 -52.49 -0.38 2.75 16 15 C 0.03 0.72 5.45 -17.47 -0.10 0.63 16 16 N -0.88 -23.34 9.47 55.50 0.53 -22.81 16 17 Si 0.93 20.75 29.56 -169.99 -5.02 15.73 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H 0.08 1.28 6.50 -51.93 -0.34 0.94 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 24 H 0.11 1.89 8.01 -51.93 -0.42 1.47 16 25 H 0.10 1.36 8.05 -51.93 -0.42 0.95 16 26 H 0.40 4.55 9.11 45.56 0.41 4.96 16 27 H 0.03 0.75 4.06 -51.93 -0.21 0.54 16 28 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 29 H 0.09 2.20 6.51 -51.93 -0.34 1.86 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 LS Contribution 257.53 15.07 3.88 3.88 Total: -1.00 -32.13 257.53 -4.31 -36.45 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.46 Total: 5.91 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.17 Total: 7.99 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.16 Total: -34.66 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.70 Total: -35.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.13 -4.31 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605018520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.093 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds