Wall clock time and date at job start Sun Mar 29 2020 22:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.55887 * 2 1 4 4 C 1.53075 * 117.51334 * 214.29415 * 2 1 3 5 5 C 1.52997 * 117.49631 * 145.68527 * 2 1 3 6 6 C 1.50698 * 117.50237 * 0.02562 * 5 2 1 7 7 O 1.20821 * 119.99777 * 333.26533 * 6 5 2 8 8 O 1.34227 * 120.00065 * 153.26101 * 6 5 2 9 9 C 1.50704 * 117.49638 * 215.00030 * 5 2 1 10 10 O 1.21289 * 120.00365 * 259.24855 * 9 5 2 11 11 N 1.34781 * 119.99756 * 79.25219 * 9 5 2 12 12 C 1.46506 * 119.99652 * 354.69143 * 11 9 5 13 13 C 1.37100 * 119.99993 * 174.69208 * 11 9 5 14 14 H 1.07997 * 119.99983 * 354.80612 * 13 11 9 15 15 C 1.38950 * 119.99788 * 174.80982 * 13 11 9 16 16 N 1.31414 * 120.00038 * 6.79989 * 15 13 11 17 17 Si 1.86800 * 119.99822 * 186.79826 * 15 13 11 18 18 H 1.48500 * 109.47213 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47131 * 119.99872 * 17 15 13 20 20 H 1.48498 * 109.47278 * 240.00113 * 17 15 13 21 21 H 1.08999 * 109.47230 * 274.31437 * 1 2 3 22 22 H 1.09001 * 109.46963 * 34.31443 * 1 2 3 23 23 H 1.08999 * 109.47016 * 154.31342 * 1 2 3 24 24 H 1.09000 * 117.48853 * 145.03546 * 4 2 1 25 25 H 1.08997 * 117.53417 * 359.97438 * 4 2 1 26 26 H 0.96699 * 117.00402 * 174.96772 * 8 6 5 27 27 H 1.08996 * 109.47561 * 354.38529 * 12 11 9 28 28 H 1.09002 * 109.46740 * 114.39110 * 12 11 9 29 29 H 1.08999 * 109.46749 * 234.38461 * 12 11 9 30 30 H 0.96999 * 119.99790 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 1.3720 -2.1409 1.4605 7 8 0.2599 -1.8418 1.8257 8 8 1.8376 -3.3815 1.6740 9 6 3.5290 -0.7809 1.4613 10 8 4.5887 -1.0797 0.9526 11 7 3.5074 -0.1447 2.6494 12 6 2.2353 0.3195 3.2086 13 6 4.6757 0.0679 3.3345 14 1 5.6017 -0.3468 2.9646 15 6 4.6684 0.8169 4.5048 16 7 3.5278 1.2083 5.0272 17 14 6.2797 1.2674 5.3354 18 1 7.4125 0.7108 4.5531 19 1 6.4050 2.7456 5.4038 20 1 6.3026 0.7046 6.7094 21 1 -0.3633 0.0773 1.0247 22 1 -0.3633 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4454 24 1 3.1724 -0.8756 -1.2679 25 1 1.6127 -1.8599 -1.2680 26 1 1.2774 -3.9781 2.1891 27 1 1.4377 0.1526 2.4848 28 1 2.0176 -0.2322 4.1231 29 1 2.3044 1.3837 3.4340 30 1 3.5227 1.7315 5.8440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605018520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:53 Heat of formation + Delta-G solvation = -105.026091 kcal Electronic energy + Delta-G solvation = -16511.146163 eV Core-core repulsion = 13693.356494 eV Total energy + Delta-G solvation = -2817.789669 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.04218 -40.18954 -38.06043 -37.10741 -36.56534 -33.62959 -29.98189 -28.55521 -26.90508 -25.93102 -23.43539 -21.75019 -20.58992 -19.33464 -18.94077 -18.29922 -17.12169 -16.87428 -16.03406 -15.93740 -15.79013 -15.13686 -14.67711 -14.25148 -13.88695 -13.57591 -13.55430 -13.33277 -12.88413 -12.74534 -12.59445 -12.48816 -12.21694 -12.13545 -11.98154 -11.31274 -11.10418 -11.00904 -10.42516 -10.00029 -8.31622 -5.99277 0.95929 1.31916 1.39188 1.54027 1.72959 2.00312 2.19390 2.57700 2.88713 3.08846 3.60636 3.69998 3.83378 4.17840 4.30347 4.49142 4.63187 4.73669 4.95457 4.99477 5.06508 5.12441 5.32666 5.37075 5.45390 5.57716 5.93527 6.36749 6.93831 7.05567 7.35425 7.88350 8.59588 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.009033 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.133401 B = 3099.081681 C = 3189.323532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 H 0.115 0.885 4 C -0.107 4.107 5 C -0.179 4.179 6 C 0.532 3.468 7 O -0.512 6.512 8 O -0.511 6.511 9 C 0.466 3.534 10 O -0.622 6.622 11 N -0.449 5.449 12 C 0.125 3.875 13 C -0.344 4.344 14 H 0.082 0.918 15 C -0.004 4.004 16 N -0.894 5.894 17 Si 0.998 3.002 18 H -0.273 1.273 19 H -0.267 1.267 20 H -0.269 1.269 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.133 0.867 26 H 0.428 0.572 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 -2.312 -5.978 9.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.113 4.113 3 H 0.133 0.867 4 C -0.144 4.144 5 C -0.184 4.184 6 C 0.375 3.625 7 O -0.401 6.401 8 O -0.324 6.324 9 C 0.255 3.745 10 O -0.510 6.510 11 N -0.166 5.166 12 C -0.018 4.018 13 C -0.471 4.471 14 H 0.100 0.900 15 C -0.205 4.205 16 N -0.533 5.533 17 Si 0.821 3.179 18 H -0.197 1.197 19 H -0.191 1.191 20 H -0.194 1.194 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.081 0.919 24 H 0.126 0.874 25 H 0.151 0.849 26 H 0.290 0.710 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.921 -1.999 -6.131 9.460 hybrid contribution 0.524 -0.301 1.181 1.326 sum -6.397 -2.300 -4.950 8.410 Atomic orbital electron populations 1.21476 0.89480 1.03049 1.03078 1.22764 0.97392 0.93605 0.97583 0.86730 1.23363 1.03296 1.00644 0.87136 1.20842 0.97305 1.02234 0.97986 1.21722 0.84286 0.81207 0.75331 1.90653 1.20949 1.79675 1.48782 1.84553 1.54299 1.23839 1.69744 1.19049 0.88619 0.84165 0.82701 1.90472 1.32956 1.60476 1.67144 1.43928 1.08177 1.48120 1.16369 1.21760 0.82843 1.01278 0.95934 1.19878 0.87836 1.33079 1.06349 0.89989 1.26181 1.02387 0.95335 0.96621 1.70289 1.25785 1.36445 1.20809 0.84807 0.76888 0.78477 0.77747 1.19728 1.19143 1.19419 0.91752 0.89417 0.91926 0.87430 0.84941 0.70989 0.92268 0.94710 0.90848 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.89 8.52 71.98 0.61 -2.28 16 2 C -0.09 -2.94 5.16 -10.77 -0.06 -2.99 16 3 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 4 C -0.11 -3.26 9.41 30.62 0.29 -2.97 16 5 C -0.18 -6.96 1.26 -53.67 -0.07 -7.03 16 6 C 0.53 19.34 6.59 71.24 0.47 19.81 16 7 O -0.51 -18.47 13.89 21.98 0.31 -18.17 16 8 O -0.51 -16.55 13.42 -51.39 -0.69 -17.24 16 9 C 0.47 23.89 6.87 87.66 0.60 24.49 16 10 O -0.62 -36.12 16.32 -3.06 -0.05 -36.17 16 11 N -0.45 -24.32 3.03 -658.87 -1.99 -26.31 16 12 C 0.12 6.08 8.42 127.77 1.08 7.16 16 13 C -0.34 -19.97 9.55 84.04 0.80 -19.16 16 14 H 0.08 5.05 7.20 -2.91 -0.02 5.03 16 15 C 0.00 -0.21 5.45 84.93 0.46 0.25 16 16 N -0.89 -47.32 9.47 21.66 0.21 -47.12 16 17 Si 1.00 42.53 29.56 68.60 2.03 44.56 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 21 H 0.06 1.88 6.50 -2.39 -0.02 1.87 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.47 7.77 -2.39 -0.02 1.45 16 24 H 0.11 3.43 8.01 -2.39 -0.02 3.41 16 25 H 0.13 3.14 8.05 -2.39 -0.02 3.12 16 26 H 0.43 8.84 9.11 -74.06 -0.67 8.17 16 27 H 0.06 2.55 4.06 -2.39 -0.01 2.54 16 28 H 0.03 1.79 7.52 -2.39 -0.02 1.77 16 29 H 0.07 3.75 6.51 -2.39 -0.02 3.73 16 30 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -69.98 257.53 4.50 -65.49 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.50 Total: 17.70 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 4.19 Total: 17.26 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.79 Total: -73.43 kcal Atomic # 8 Polarization: -71.14 SS G_CDS: -0.43 Total: -71.57 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -69.98 4.50 -65.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605018520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.539 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds