Wall clock time and date at job start Sun Mar 29 2020 21:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86803 * 119.99527 * 2 1 4 4 H 1.48499 * 109.47042 * 239.99781 * 3 2 1 5 5 H 1.48494 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47103 * 120.00258 * 3 2 1 7 7 C 1.40051 * 120.00561 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99763 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99995 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00000 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00038 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.05335 * 33.58384 * 12 11 9 14 14 C 1.54269 * 110.03274 * 272.16564 * 12 11 9 15 15 C 1.54882 * 104.19831 * 264.32675 * 14 12 11 16 16 C 1.54888 * 102.74855 * 322.05471 * 15 14 12 17 17 C 1.53873 * 110.03318 * 155.00078 * 12 11 9 18 18 H 1.09002 * 110.03070 * 359.97438 * 17 12 11 19 19 C 1.50702 * 110.03212 * 238.61567 * 17 12 11 20 20 O 1.20818 * 120.00013 * 0.69471 * 19 17 12 21 21 O 1.34228 * 119.99994 * 180.68765 * 19 17 12 22 22 H 0.97003 * 120.00836 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00031 * 0.02562 * 11 9 7 24 24 H 1.09000 * 110.48429 * 23.00988 * 14 12 11 25 25 H 1.09001 * 110.48672 * 145.64481 * 14 12 11 26 26 H 1.08998 * 110.75605 * 80.36842 * 15 14 12 27 27 H 1.09002 * 110.75549 * 203.56377 * 15 14 12 28 28 H 1.09001 * 110.49097 * 279.26569 * 16 15 14 29 29 H 1.08999 * 110.48858 * 156.61808 * 16 15 14 30 30 H 0.96694 * 117.00553 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0584 -2.4806 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2168 -4.9164 -0.0011 13 1 0.2914 -4.8135 -0.5678 14 6 0.9046 -5.3470 1.4470 15 6 2.0527 -6.3212 1.8095 16 6 2.2751 -7.0950 0.4863 17 6 2.0882 -6.0278 -0.6120 18 1 3.0559 -5.6230 -0.9084 19 6 1.3939 -6.6305 -1.8060 20 8 0.3149 -6.2119 -2.1524 21 8 1.9745 -7.6325 -2.4849 22 1 -0.4851 0.8400 -0.0004 23 1 2.9192 -3.6476 -0.0002 24 1 0.9127 -4.4834 2.1119 25 1 -0.0577 -5.8569 1.4943 26 1 2.9510 -5.7719 2.0914 27 1 1.7481 -6.9969 2.6088 28 1 1.5342 -7.8872 0.3784 29 1 3.2836 -7.5070 0.4501 30 1 1.4912 -7.9866 -3.2438 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608177949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:15 Heat of formation + Delta-G solvation = -173.448926 kcal Electronic energy + Delta-G solvation = -15905.327310 eV Core-core repulsion = 13084.570604 eV Total energy + Delta-G solvation = -2820.756706 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.70252 -39.77578 -38.01438 -37.09804 -34.71725 -33.74345 -30.65086 -29.33942 -27.55435 -24.26733 -22.39584 -21.48023 -20.62332 -19.26228 -19.01280 -17.97135 -17.31815 -16.98188 -16.45100 -15.82527 -15.58287 -15.16217 -14.55212 -14.26628 -14.11584 -13.42387 -12.96694 -12.80587 -12.71447 -12.62249 -12.47403 -12.42101 -12.05018 -11.97698 -11.86643 -11.71028 -11.33326 -10.91546 -9.85053 -9.46158 -8.28045 -6.85440 1.16075 1.39708 1.43941 1.55522 1.99494 2.26012 2.48302 3.15143 3.35500 3.55077 3.77298 4.00887 4.34897 4.38840 4.40227 4.63050 4.73351 4.74606 4.98709 5.07409 5.24419 5.28735 5.32202 5.39686 5.58319 5.88848 6.26165 6.29505 6.86968 6.96865 7.57978 8.51977 8.69370 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.038506 B = 0.006946 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.983389 B = 4030.119160 C = 4247.085112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.744 5.744 12 C 0.146 3.854 13 H 0.050 0.950 14 C -0.134 4.134 15 C -0.109 4.109 16 C -0.094 4.094 17 C -0.089 4.089 18 H 0.134 0.866 19 C 0.490 3.510 20 O -0.556 6.556 21 O -0.499 6.499 22 H 0.274 0.726 23 H 0.396 0.604 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.126 -13.601 0.354 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.611 4.611 8 H 0.109 0.891 9 C 0.342 3.658 10 O -0.519 6.519 11 N -0.399 5.399 12 C 0.039 3.961 13 H 0.068 0.932 14 C -0.173 4.173 15 C -0.147 4.147 16 C -0.131 4.131 17 C -0.108 4.108 18 H 0.152 0.848 19 C 0.333 3.667 20 O -0.446 6.446 21 O -0.312 6.312 22 H 0.083 0.917 23 H 0.231 0.769 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 9.004 -13.276 0.576 16.052 hybrid contribution -0.345 0.746 -0.746 1.110 sum 8.658 -12.531 -0.170 15.232 Atomic orbital electron populations 1.70205 1.09690 1.28954 1.36610 1.27036 0.95508 1.05153 0.91208 0.85044 0.78138 0.74539 0.80375 1.17828 1.20120 1.17497 1.21432 0.94840 0.89972 1.54836 0.89070 1.18634 0.86842 0.84404 0.75884 1.90567 1.16487 1.87893 1.57003 1.45837 1.08966 1.04107 1.80975 1.21230 0.95001 0.83531 0.96306 0.93180 1.22736 0.99776 0.99327 0.95467 1.22492 0.97558 0.97073 0.97543 1.22329 1.04764 0.95148 0.90881 1.21973 1.00228 0.96711 0.91910 0.84817 1.23513 0.83130 0.76538 0.83478 1.90761 1.24327 1.61408 1.68142 1.84473 1.53143 1.48146 1.45481 0.91660 0.76946 0.93791 0.92095 0.90085 0.88908 0.90504 0.86641 0.71198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -52.19 11.83 21.84 0.26 -51.93 16 2 C 0.03 1.46 5.50 85.31 0.47 1.93 16 3 Si 1.00 41.57 29.56 68.60 2.03 43.59 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.57 -33.08 9.54 24.83 0.24 -32.84 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.54 32.18 7.74 86.36 0.67 32.85 16 10 O -0.63 -44.45 14.67 -4.31 -0.06 -44.51 16 11 N -0.74 -33.87 5.02 -443.39 -2.23 -36.10 16 12 C 0.15 5.89 2.84 45.72 0.13 6.02 16 13 H 0.05 2.60 5.82 -2.39 -0.01 2.59 16 14 C -0.13 -4.74 6.54 31.67 0.21 -4.53 16 15 C -0.11 -2.46 6.91 31.88 0.22 -2.24 16 16 C -0.09 -1.82 6.33 31.67 0.20 -1.62 16 17 C -0.09 -2.47 3.17 -10.81 -0.03 -2.50 16 18 H 0.13 3.17 7.62 -2.39 -0.02 3.16 16 19 C 0.49 14.61 7.48 71.24 0.53 15.15 16 20 O -0.56 -22.60 15.97 21.99 0.35 -22.25 16 21 O -0.50 -9.89 13.40 -51.40 -0.69 -10.58 16 22 H 0.27 15.72 8.29 -92.71 -0.77 14.95 16 23 H 0.40 14.88 8.30 -92.71 -0.77 14.11 16 24 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.42 7.85 -2.39 -0.02 1.40 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.43 4.95 9.10 -74.06 -0.67 4.27 16 Total: -1.00 -86.43 263.27 2.03 -84.41 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.26 Total: 25.17 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 2.63 Total: 12.20 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.97 Total: -88.03 kcal Atomic # 8 Polarization: -76.94 SS G_CDS: -0.40 Total: -77.34 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -86.43 2.03 -84.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.044 kcal (2) G-P(sol) polarization free energy of solvation -86.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds