Wall clock time and date at job start Sun Mar 29 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 N 1.40441 * 126.81913 * 89.97942 * 3 2 1 5 5 C 1.30720 * 106.79068 * 180.02562 * 4 3 2 6 6 N 1.33234 * 108.94479 * 0.24000 * 5 4 3 7 7 C 1.30832 * 109.83313 * 359.58957 * 6 5 4 8 8 C 1.50700 * 125.96850 * 180.12247 * 7 6 5 9 9 S 1.81397 * 109.47308 * 270.33344 * 8 7 6 10 10 C 1.81399 * 103.00118 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47224 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00236 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00263 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99741 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00328 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46840 * 59.99995 * 15 13 11 17 17 H 1.48497 * 109.47204 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46873 * 300.00148 * 15 13 11 19 19 H 1.08999 * 109.46792 * 300.00449 * 1 2 3 20 20 H 1.09000 * 109.46804 * 59.99937 * 1 2 3 21 21 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46799 * 240.00037 * 2 1 3 23 23 H 1.08998 * 109.46680 * 120.00596 * 2 1 3 24 24 H 1.08002 * 125.52440 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.46492 * 30.33012 * 8 7 6 26 26 H 1.08999 * 109.47248 * 150.32833 * 8 7 6 27 27 H 1.08993 * 109.47300 * 300.00121 * 10 9 8 28 28 H 1.09001 * 109.46604 * 59.99887 * 10 9 8 29 29 H 0.96997 * 120.00079 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2986 2.1748 1.1243 5 6 2.7077 3.3329 0.6766 6 7 2.6944 3.3108 -0.6555 7 6 2.2870 2.1409 -1.0761 8 6 2.1379 1.7204 -2.5155 9 16 0.4658 2.1221 -3.0928 10 6 0.4804 1.5518 -4.8147 11 6 -0.8625 1.8193 -5.4440 12 1 -1.6466 2.2854 -4.8657 13 6 -1.0906 1.4680 -6.7576 14 7 -0.1362 0.8991 -7.4613 15 14 -2.7550 1.8003 -7.5379 16 1 -3.0362 3.2580 -7.5022 17 1 -2.7434 1.3322 -8.9471 18 1 -3.8087 1.0743 -6.7842 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.0039 4.1728 1.2875 25 1 2.8698 2.2492 -3.1261 26 1 2.3030 0.6463 -2.5993 27 1 1.2538 2.0850 -5.3675 28 1 0.6871 0.4819 -4.8412 29 1 -0.2965 0.6523 -8.3856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643988345.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:02 Heat of formation + Delta-G solvation = 75.219828 kcal Electronic energy + Delta-G solvation = -13143.499676 eV Core-core repulsion = 10808.571678 eV Total energy + Delta-G solvation = -2334.927997 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.96360 -35.02382 -33.21583 -32.43279 -30.17219 -28.67332 -27.84696 -24.04233 -23.12926 -21.67756 -20.25203 -17.09321 -16.57398 -15.95567 -15.17952 -15.05249 -14.45173 -14.26012 -13.83578 -13.26128 -12.91978 -12.68264 -12.44776 -12.18982 -12.12130 -11.73723 -11.13240 -10.89321 -10.84858 -10.32358 -9.84605 -9.71934 -9.62166 -9.26243 -8.96499 -8.66727 -6.83521 -6.25535 -4.30347 1.46876 2.34998 2.49865 3.25006 3.27052 3.28576 3.33267 3.64895 4.20217 4.30925 4.49374 4.83832 4.97420 5.01385 5.11972 5.16810 5.51886 5.58222 5.72012 5.84680 6.23827 6.41231 6.56580 6.87977 6.98087 7.02152 7.68414 7.92546 8.23958 8.70995 9.33261 10.85578 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.046460 B = 0.005924 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.525027 B = 4725.107561 C = 4929.579770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 N -0.369 5.369 4 N -0.327 5.327 5 C 0.195 3.805 6 N -0.535 5.535 7 C 0.309 3.691 8 C -0.027 4.027 9 S -0.266 6.266 10 C 0.088 3.912 11 C -0.514 4.514 12 H 0.067 0.933 13 C 0.068 3.932 14 N -0.892 5.892 15 Si 0.907 3.093 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.060 0.940 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.215 0.785 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.225 -2.273 11.903 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 N -0.160 5.160 4 N -0.155 5.155 5 C -0.108 4.108 6 N -0.264 5.264 7 C 0.032 3.968 8 C -0.177 4.177 9 S -0.041 6.041 10 C -0.058 4.058 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.734 3.266 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 H 0.079 0.921 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.115 0.885 23 H 0.112 0.888 24 H 0.232 0.768 25 H 0.129 0.871 26 H 0.113 0.887 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.484 -1.877 12.862 13.457 hybrid contribution 0.146 -0.557 -1.248 1.375 sum 3.630 -2.434 11.613 12.409 Atomic orbital electron populations 1.22279 0.93247 1.03497 1.04485 1.21791 0.96316 0.77247 1.04274 1.50401 1.48914 1.13113 1.03621 1.77963 1.24117 1.05042 1.08399 1.25905 0.98265 0.96075 0.90514 1.70484 1.25051 1.19536 1.11296 1.23442 0.94598 0.87339 0.91386 1.21681 1.02980 1.03938 0.89091 1.86988 1.11640 1.83980 1.21461 1.21154 1.01688 0.98646 0.84361 1.20582 0.96645 1.41619 0.96531 0.91478 1.24943 0.97651 0.94560 0.96516 1.69934 1.32773 1.40588 1.09673 0.86400 0.83110 0.79020 0.78068 1.19830 1.21018 1.19905 0.92061 0.89712 0.90379 0.88531 0.88808 0.76818 0.87066 0.88721 0.94158 0.94355 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 10.24 37.16 0.38 -1.71 15 2 C 0.13 1.45 7.02 -4.04 -0.03 1.42 15 3 N -0.37 -5.56 3.64 -58.34 -0.21 -5.78 15 4 N -0.33 -5.08 12.70 29.29 0.37 -4.70 15 5 C 0.20 2.89 13.03 -91.81 -1.20 1.69 15 6 N -0.54 -9.28 11.19 -11.97 -0.13 -9.41 15 7 C 0.31 5.14 7.24 -155.69 -1.13 4.01 15 8 C -0.03 -0.45 6.26 36.01 0.23 -0.22 15 9 S -0.27 -5.51 20.97 -107.50 -2.25 -7.77 15 10 C 0.09 2.17 5.70 36.00 0.21 2.37 15 11 C -0.51 -13.97 9.13 -34.44 -0.31 -14.29 15 12 H 0.07 1.83 7.71 -52.48 -0.40 1.43 15 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 14 N -0.89 -25.10 13.29 55.43 0.74 -24.36 15 15 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 15 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.08 1.24 7.46 -51.93 -0.39 0.85 15 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.10 0.97 7.11 -51.93 -0.37 0.60 15 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.22 2.22 8.06 -52.49 -0.42 1.80 15 25 H 0.11 1.81 8.14 -51.92 -0.42 1.38 15 26 H 0.09 1.34 7.13 -51.92 -0.37 0.97 15 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.04 0.95 8.14 -51.92 -0.42 0.53 15 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 271.34 15.07 4.09 4.09 Total: -1.00 -30.68 271.34 -8.00 -38.68 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -3.63 Total: -1.61 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.95 Total: -4.98 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.76 Total: -44.25 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -2.25 Total: -7.77 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.68 -8.00 -38.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643988345.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.899 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds