Wall clock time and date at job start Sun Mar 29 2020 21:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47824 * 2 1 4 4 C 1.53004 * 109.50882 * 305.09933 * 3 2 1 5 5 C 1.53286 * 109.51594 * 184.99764 * 3 2 1 6 6 N 1.47154 * 108.38655 * 187.77134 * 5 3 2 7 7 C 1.34776 * 120.98571 * 230.55792 * 6 5 3 8 8 O 1.21686 * 120.00558 * 174.76730 * 7 6 5 9 9 C 1.46377 * 119.99965 * 354.77034 * 7 6 5 10 10 H 1.08004 * 119.99797 * 5.00450 * 9 7 6 11 11 C 1.40051 * 120.00482 * 185.00036 * 9 7 6 12 12 N 1.30677 * 119.99496 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00330 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46869 * 59.99868 * 13 11 9 15 15 H 1.48499 * 109.47095 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47072 * 300.00237 * 13 11 9 17 17 C 1.47153 * 118.03499 * 50.53447 * 6 5 3 18 18 C 1.53295 * 108.38395 * 309.46576 * 17 6 5 19 19 O 1.42962 * 109.22391 * 52.30414 * 18 17 6 20 20 H 1.08993 * 109.47871 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47243 * 300.00784 * 1 2 3 22 22 H 1.09009 * 109.46645 * 60.00040 * 1 2 3 23 23 H 1.09009 * 109.46645 * 119.99960 * 2 1 3 24 24 H 1.08998 * 109.47243 * 239.99216 * 2 1 3 25 25 H 1.09002 * 109.47156 * 59.99962 * 4 3 2 26 26 H 1.08995 * 109.47275 * 179.97438 * 4 3 2 27 27 H 1.08993 * 109.47195 * 299.99622 * 4 3 2 28 28 H 1.08996 * 109.68514 * 307.49889 * 5 3 2 29 29 H 1.09007 * 109.68535 * 68.01574 * 5 3 2 30 30 H 0.96999 * 119.99763 * 179.97438 * 12 11 9 31 31 H 1.08996 * 109.68382 * 69.18870 * 17 6 5 32 32 H 1.09002 * 109.68517 * 189.74447 * 17 6 5 33 33 H 1.09003 * 109.51327 * 172.22086 * 18 17 6 34 34 H 1.08999 * 109.51522 * 292.37441 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4287 2.2006 -1.1799 5 6 3.5678 1.4452 -0.1259 6 7 4.0466 2.8236 0.0644 7 6 4.8914 3.3927 -0.8182 8 8 5.2013 4.5631 -0.6962 9 6 5.4362 2.6029 -1.9237 10 1 5.0996 1.5886 -2.0799 11 6 6.3937 3.1625 -2.7789 12 7 6.8004 4.3899 -2.5903 13 14 7.0894 2.1543 -4.1892 14 1 5.9877 1.7504 -5.0994 15 1 8.0775 2.9697 -4.9402 16 1 7.7553 0.9418 -3.6495 17 6 3.5755 3.5625 1.2465 18 6 2.0473 3.4565 1.3055 19 8 1.6674 2.0808 1.2238 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8932 -0.5139 0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 0.3425 2.1998 -1.0888 26 1 1.7921 3.2282 -1.1791 27 1 1.7155 1.7143 -2.1122 28 1 4.0002 0.7978 0.6369 29 1 3.8554 1.0895 -1.1153 30 1 7.4639 4.7774 -3.1823 31 1 4.0086 3.1283 2.1476 32 1 3.8680 4.6094 1.1658 33 1 1.6891 3.8778 2.2449 34 1 1.6118 4.0048 0.4702 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334378523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:28 Heat of formation + Delta-G solvation = -84.177663 kcal Electronic energy + Delta-G solvation = -16838.620515 eV Core-core repulsion = 14157.567996 eV Total energy + Delta-G solvation = -2681.052519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61991 -36.83670 -34.23617 -33.35904 -32.45317 -29.85669 -28.42628 -26.50870 -25.57771 -23.55996 -22.13169 -19.49170 -18.75915 -16.69535 -16.02931 -15.69067 -15.26569 -14.47927 -14.33802 -14.16234 -13.70982 -13.43209 -13.06377 -12.55660 -12.03854 -11.76198 -11.65320 -11.44495 -11.40426 -11.20275 -11.03232 -10.93787 -10.74209 -10.47014 -10.28894 -10.09951 -9.78274 -9.35036 -8.87119 -7.63738 -7.18560 -6.23705 -4.68889 3.12425 3.17637 3.19125 4.01845 4.11591 4.46071 4.53140 5.06782 5.17008 5.33929 5.48064 5.55316 5.65534 5.71569 5.78905 5.87529 5.93639 6.01855 6.09050 6.16809 6.24867 6.35094 6.36926 6.43497 6.52530 6.55281 6.73202 7.40716 7.52138 7.65394 8.07570 8.30155 8.97856 9.38242 10.53125 10.71588 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.032222 B = 0.009072 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.751502 B = 3085.782333 C = 3699.541802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.100 3.900 4 C -0.172 4.172 5 C 0.103 3.897 6 N -0.642 5.642 7 C 0.561 3.439 8 O -0.578 6.578 9 C -0.543 4.543 10 H 0.071 0.929 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.906 3.094 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.086 3.914 18 C 0.047 3.953 19 O -0.379 6.379 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.269 0.731 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 -7.410 3.084 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C 0.059 3.941 4 C -0.229 4.229 5 C -0.021 4.021 6 N -0.381 5.381 7 C 0.367 3.633 8 O -0.460 6.460 9 C -0.580 4.580 10 H 0.089 0.911 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.731 3.269 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.192 1.192 17 C -0.039 4.039 18 C -0.030 4.030 19 O -0.298 6.298 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.088 -6.671 3.223 11.726 hybrid contribution 0.514 -0.383 -0.825 1.045 sum -8.574 -7.054 2.398 11.359 Atomic orbital electron populations 1.21763 0.95617 1.00890 1.02303 1.21449 0.96388 0.94099 1.02502 1.21939 0.94700 0.92704 0.84713 1.22343 1.00237 1.02047 0.98260 1.22048 0.91687 0.85619 1.02781 1.48225 1.51217 1.13232 1.25468 1.18242 0.76968 0.86785 0.81265 1.90589 1.62193 1.17283 1.75974 1.20909 1.24614 1.00063 1.12411 0.91060 1.25728 0.95303 0.94576 0.97608 1.70004 1.23253 1.12795 1.33590 0.86453 0.79128 0.80256 0.81085 1.19205 1.20497 1.19203 1.21795 0.93117 0.99479 0.89476 1.22959 0.95498 0.83145 1.01418 1.87859 1.80269 1.24005 1.37712 0.93275 0.92212 0.92573 0.91370 0.90600 0.92440 0.91601 0.91563 0.93336 0.88443 0.91982 0.93349 0.89171 0.89209 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.32 37.15 0.35 -1.39 16 2 C -0.11 -1.41 5.23 -26.74 -0.14 -1.55 16 3 C 0.10 1.64 0.80 -90.47 -0.07 1.57 16 4 C -0.17 -2.82 7.60 37.16 0.28 -2.54 16 5 C 0.10 2.00 5.17 -3.54 -0.02 1.98 16 6 N -0.64 -14.91 2.54 -173.94 -0.44 -15.35 16 7 C 0.56 16.00 7.63 -12.99 -0.10 15.90 16 8 O -0.58 -18.70 14.51 5.20 0.08 -18.63 16 9 C -0.54 -15.13 8.86 -35.63 -0.32 -15.44 16 10 H 0.07 1.80 5.76 -52.48 -0.30 1.50 16 11 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 12 N -0.77 -22.90 11.84 55.55 0.66 -22.24 16 13 Si 0.91 19.89 29.56 -169.99 -5.02 14.86 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 17 C 0.09 1.74 6.65 -3.53 -0.02 1.71 16 18 C 0.05 0.80 6.60 37.31 0.25 1.05 16 19 O -0.38 -6.50 9.77 -35.23 -0.34 -6.85 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.06 0.74 7.83 -51.93 -0.41 0.34 16 22 H 0.06 0.64 6.35 -51.92 -0.33 0.31 16 23 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.83 6.35 -51.93 -0.33 0.50 16 26 H 0.07 1.26 6.12 -51.93 -0.32 0.95 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.93 5.50 -51.93 -0.29 1.64 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.98 7.06 -51.93 -0.37 1.62 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.93 6.25 -51.93 -0.32 0.60 16 LS Contribution 269.40 15.07 4.06 4.06 Total: -1.00 -33.17 269.40 -5.66 -38.83 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.76 Total: 1.69 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.11 Total: 3.62 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.22 Total: -37.59 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.27 Total: -25.47 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.17 -5.66 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334378523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.346 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds