Wall clock time and date at job start Sun Mar 29 2020 21:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47824 * 2 1 4 4 C 1.53004 * 109.50882 * 305.09933 * 3 2 1 5 5 C 1.53286 * 109.51594 * 184.99764 * 3 2 1 6 6 N 1.47154 * 108.38655 * 187.77134 * 5 3 2 7 7 C 1.34776 * 120.98571 * 230.55792 * 6 5 3 8 8 O 1.21686 * 120.00558 * 174.76730 * 7 6 5 9 9 C 1.46377 * 119.99965 * 354.77034 * 7 6 5 10 10 H 1.08004 * 119.99797 * 5.00450 * 9 7 6 11 11 C 1.40051 * 120.00482 * 185.00036 * 9 7 6 12 12 N 1.30677 * 119.99496 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00330 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46869 * 59.99868 * 13 11 9 15 15 H 1.48499 * 109.47095 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47072 * 300.00237 * 13 11 9 17 17 C 1.47153 * 118.03499 * 50.53447 * 6 5 3 18 18 C 1.53295 * 108.38395 * 309.46576 * 17 6 5 19 19 O 1.42962 * 109.22391 * 52.30414 * 18 17 6 20 20 H 1.08993 * 109.47871 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47243 * 300.00784 * 1 2 3 22 22 H 1.09009 * 109.46645 * 60.00040 * 1 2 3 23 23 H 1.09009 * 109.46645 * 119.99960 * 2 1 3 24 24 H 1.08998 * 109.47243 * 239.99216 * 2 1 3 25 25 H 1.09002 * 109.47156 * 59.99962 * 4 3 2 26 26 H 1.08995 * 109.47275 * 179.97438 * 4 3 2 27 27 H 1.08993 * 109.47195 * 299.99622 * 4 3 2 28 28 H 1.08996 * 109.68514 * 307.49889 * 5 3 2 29 29 H 1.09007 * 109.68535 * 68.01574 * 5 3 2 30 30 H 0.96999 * 119.99763 * 179.97438 * 12 11 9 31 31 H 1.08996 * 109.68382 * 69.18870 * 17 6 5 32 32 H 1.09002 * 109.68517 * 189.74447 * 17 6 5 33 33 H 1.09003 * 109.51327 * 172.22086 * 18 17 6 34 34 H 1.08999 * 109.51522 * 292.37441 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4287 2.2006 -1.1799 5 6 3.5678 1.4452 -0.1259 6 7 4.0466 2.8236 0.0644 7 6 4.8914 3.3927 -0.8182 8 8 5.2013 4.5631 -0.6962 9 6 5.4362 2.6029 -1.9237 10 1 5.0996 1.5886 -2.0799 11 6 6.3937 3.1625 -2.7789 12 7 6.8004 4.3899 -2.5903 13 14 7.0894 2.1543 -4.1892 14 1 5.9877 1.7504 -5.0994 15 1 8.0775 2.9697 -4.9402 16 1 7.7553 0.9418 -3.6495 17 6 3.5755 3.5625 1.2465 18 6 2.0473 3.4565 1.3055 19 8 1.6674 2.0808 1.2238 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8932 -0.5139 0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 0.3425 2.1998 -1.0888 26 1 1.7921 3.2282 -1.1791 27 1 1.7155 1.7143 -2.1122 28 1 4.0002 0.7978 0.6369 29 1 3.8554 1.0895 -1.1153 30 1 7.4639 4.7774 -3.1823 31 1 4.0086 3.1283 2.1476 32 1 3.8680 4.6094 1.1658 33 1 1.6891 3.8778 2.2449 34 1 1.6118 4.0048 0.4702 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334378523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:28 Heat of formation + Delta-G solvation = -107.303666 kcal Electronic energy + Delta-G solvation = -16839.623334 eV Core-core repulsion = 14157.567996 eV Total energy + Delta-G solvation = -2682.055337 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14204 -38.80268 -35.54194 -35.17788 -34.57371 -31.22050 -29.89195 -28.39651 -27.22624 -24.95995 -23.62878 -21.19474 -20.30884 -18.57130 -17.87030 -17.26843 -16.75803 -16.12330 -16.11430 -15.61410 -15.21514 -14.79036 -14.46350 -14.35065 -13.69336 -13.26851 -13.21801 -13.02907 -12.88039 -12.72822 -12.68495 -12.42446 -12.08982 -12.05809 -11.81981 -11.61039 -11.22624 -10.96151 -10.81300 -9.83479 -9.04518 -8.31874 -6.87149 1.38547 1.41858 1.53566 2.21112 2.42776 2.63270 2.87551 3.54278 3.78925 3.96268 4.00116 4.12025 4.24698 4.43593 4.46873 4.61677 4.64201 4.71800 4.74158 4.82605 4.94975 4.97057 5.11106 5.17590 5.22248 5.34153 5.37498 5.56314 5.68396 6.06721 6.26981 6.32125 6.84724 7.35757 8.42167 8.63988 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.032222 B = 0.009072 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.751502 B = 3085.782333 C = 3699.541802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C 0.102 3.898 4 C -0.167 4.167 5 C 0.098 3.902 6 N -0.646 5.646 7 C 0.543 3.457 8 O -0.632 6.632 9 C -0.567 4.567 10 H 0.093 0.907 11 C 0.029 3.971 12 N -0.823 5.823 13 Si 0.995 3.005 14 H -0.252 1.252 15 H -0.275 1.275 16 H -0.252 1.252 17 C 0.081 3.919 18 C 0.058 3.942 19 O -0.376 6.376 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.274 0.726 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -10.031 2.607 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C 0.062 3.938 4 C -0.224 4.224 5 C -0.025 4.025 6 N -0.383 5.383 7 C 0.350 3.650 8 O -0.520 6.520 9 C -0.603 4.603 10 H 0.111 0.889 11 C -0.186 4.186 12 N -0.453 5.453 13 Si 0.813 3.187 14 H -0.175 1.175 15 H -0.200 1.200 16 H -0.176 1.176 17 C -0.043 4.043 18 C -0.020 4.020 19 O -0.295 6.295 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.325 -9.341 2.785 14.199 hybrid contribution 0.853 0.438 -0.594 1.128 sum -9.471 -8.902 2.191 13.182 Atomic orbital electron populations 1.21731 0.94143 1.02297 1.01989 1.21488 0.97593 0.91408 1.03572 1.22034 0.92440 0.94866 0.84485 1.22306 1.01599 0.99885 0.98589 1.22289 0.94085 0.83395 1.02765 1.48083 1.50177 1.14826 1.25211 1.18657 0.77551 0.86394 0.82403 1.90536 1.64399 1.19472 1.77580 1.21428 1.25057 1.01077 1.12722 0.88896 1.27009 0.95184 0.95703 1.00737 1.70186 1.24287 1.15399 1.35393 0.85117 0.78552 0.78349 0.76637 1.17535 1.20023 1.17631 1.21966 0.95863 0.97750 0.88731 1.22918 0.92562 0.83450 1.03021 1.87880 1.79835 1.23787 1.38037 0.91078 0.92989 0.92393 0.90760 0.89146 0.90159 0.95086 0.91178 0.92316 0.89051 0.91568 0.92150 0.91853 0.85613 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.32 71.98 0.67 -2.18 16 2 C -0.10 -2.38 5.23 30.59 0.16 -2.22 16 3 C 0.10 3.15 0.80 -10.70 -0.01 3.14 16 4 C -0.17 -5.26 7.60 71.98 0.55 -4.71 16 5 C 0.10 3.71 5.17 86.35 0.45 4.15 16 6 N -0.65 -30.49 2.54 -822.44 -2.09 -32.58 16 7 C 0.54 32.09 7.63 86.36 0.66 32.75 16 8 O -0.63 -43.14 14.51 -4.30 -0.06 -43.21 16 9 C -0.57 -31.97 8.86 24.83 0.22 -31.75 16 10 H 0.09 4.65 5.76 -2.91 -0.02 4.63 16 11 C 0.03 1.60 5.50 85.30 0.47 2.07 16 12 N -0.82 -50.69 11.84 21.84 0.26 -50.43 16 13 Si 0.99 40.50 29.56 68.60 2.03 42.53 16 14 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 17 C 0.08 3.32 6.65 86.35 0.57 3.90 16 18 C 0.06 1.90 6.60 72.08 0.48 2.37 16 19 O -0.38 -12.07 9.77 -148.98 -1.46 -13.52 16 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.11 7.83 -2.39 -0.02 1.10 16 22 H 0.06 1.12 6.35 -2.38 -0.02 1.11 16 23 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 2.14 6.35 -2.39 -0.02 2.13 16 26 H 0.03 1.18 6.12 -2.39 -0.01 1.17 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 3.53 5.50 -2.38 -0.01 3.52 16 30 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.93 7.06 -2.39 -0.02 2.92 16 33 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.04 1.56 6.25 -2.39 -0.01 1.55 16 Total: -1.00 -74.70 269.40 3.98 -70.71 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.09 Total: 18.97 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 4.21 Total: 7.52 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.83 Total: -83.01 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.52 Total: -56.73 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -74.70 3.98 -70.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334378523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.589 kcal (2) G-P(sol) polarization free energy of solvation -74.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds