Wall clock time and date at job start Sun Mar 29 2020 21:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.46927 * 2 1 4 4 C 1.34230 * 116.99990 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99791 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00101 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47379 * 174.36988 * 6 4 3 8 8 C 1.46899 * 110.99907 * 288.30419 * 7 6 4 9 9 C 1.50700 * 109.47205 * 170.00050 * 8 7 6 10 10 H 1.07993 * 119.99787 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99681 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00629 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99625 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47190 * 89.99612 * 13 11 9 15 15 H 1.48502 * 109.47075 * 209.99608 * 13 11 9 16 16 H 1.48499 * 109.47158 * 329.99725 * 13 11 9 17 17 C 1.46894 * 111.00141 * 164.34835 * 7 6 4 18 18 C 1.52998 * 117.50053 * 7.06186 * 17 7 6 19 19 C 1.53007 * 60.00232 * 252.50974 * 18 17 7 20 20 H 1.09008 * 109.46928 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47621 * 299.99545 * 1 2 3 22 22 H 1.09002 * 109.47288 * 60.00414 * 1 2 3 23 23 H 1.09000 * 109.46999 * 240.00079 * 2 1 3 24 24 H 1.09000 * 109.46762 * 120.00138 * 2 1 3 25 25 H 1.09006 * 109.46581 * 294.36690 * 6 4 3 26 26 H 1.08991 * 109.47333 * 54.36453 * 6 4 3 27 27 H 1.09004 * 109.47064 * 289.99865 * 8 7 6 28 28 H 1.09004 * 109.47186 * 49.99478 * 8 7 6 29 29 H 0.96992 * 120.00563 * 180.02562 * 12 11 9 30 30 H 1.09004 * 115.55040 * 152.77158 * 17 7 6 31 31 H 1.08997 * 117.49643 * 359.97438 * 18 17 7 32 32 H 1.08995 * 117.50161 * 145.02298 * 18 17 7 33 33 H 1.08999 * 117.49705 * 252.51139 * 19 18 17 34 34 H 1.08994 * 117.52096 * 107.47663 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 7 5.3814 2.8632 0.1375 8 6 5.7632 2.4551 1.4961 9 6 7.2390 2.1524 1.5336 10 1 7.8337 2.2526 0.6377 11 6 7.8297 1.7464 2.7114 12 7 7.1054 1.6238 3.8022 13 14 9.6589 1.3704 2.7577 14 1 10.4098 2.6059 3.0966 15 1 9.9249 0.3319 3.7854 16 1 10.0961 0.8745 1.4280 17 6 6.0096 4.1407 -0.2245 18 6 5.0861 5.3286 -0.5016 19 6 5.8167 4.6418 -1.6573 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.6680 3.4355 -0.9350 26 1 3.5060 3.5018 0.8363 27 1 5.5400 3.2621 2.1941 28 1 5.2022 1.5645 1.7791 29 1 7.5210 1.3386 4.6309 30 1 6.9656 4.3475 0.2565 31 1 4.0123 5.1621 -0.4157 32 1 5.4343 6.3173 -0.2028 33 1 6.6456 5.1787 -2.1186 34 1 5.2240 4.0233 -2.3313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038342279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:16 Heat of formation + Delta-G solvation = -72.484059 kcal Electronic energy + Delta-G solvation = -16031.477706 eV Core-core repulsion = 13350.932260 eV Total energy + Delta-G solvation = -2680.545446 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55295 -39.56716 -37.54441 -35.45525 -34.03254 -32.67075 -30.21138 -27.47125 -24.42649 -24.12750 -23.18351 -22.39717 -20.57744 -18.96466 -18.54626 -17.74464 -17.51624 -16.70504 -16.25341 -16.07675 -15.34042 -14.76409 -14.52655 -14.04672 -13.90783 -13.60193 -13.36232 -13.08318 -12.84540 -12.66792 -12.53131 -12.49168 -12.27750 -12.05278 -11.78150 -11.52111 -11.36414 -11.22491 -11.07077 -10.58899 -8.91401 -8.21293 -6.30210 1.23853 1.38515 1.41432 1.52815 1.60166 2.39528 2.92245 3.11114 3.32129 3.79308 3.98049 3.98552 4.11063 4.12104 4.18940 4.23091 4.34766 4.38138 4.81620 4.85168 4.92884 4.98224 5.05363 5.13789 5.18229 5.23238 5.32261 5.45598 5.63702 6.01398 6.28297 6.45330 6.83425 6.87679 7.38030 8.90378 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.008152 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.012944 B = 3433.984685 C = 4400.796633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 O -0.362 6.362 4 C 0.456 3.544 5 O -0.520 6.520 6 C 0.060 3.940 7 N -0.508 5.508 8 C 0.213 3.787 9 C -0.519 4.519 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.936 5.936 13 Si 0.971 3.029 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.008 3.992 18 C -0.206 4.206 19 C -0.161 4.161 20 H 0.101 0.899 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.143 0.857 26 H 0.080 0.920 27 H -0.029 1.029 28 H 0.001 0.999 29 H 0.264 0.736 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 3.962 -9.186 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.279 6.279 4 C 0.299 3.701 5 O -0.408 6.408 6 C -0.068 4.068 7 N -0.231 5.231 8 C 0.087 3.913 9 C -0.557 4.557 10 H 0.079 0.921 11 C -0.198 4.198 12 N -0.577 5.577 13 Si 0.795 3.205 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.101 4.101 18 C -0.245 4.245 19 C -0.199 4.199 20 H 0.119 0.881 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.098 0.902 27 H -0.012 1.012 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.546 3.202 -9.321 14.435 hybrid contribution 0.711 -0.149 1.093 1.312 sum -9.835 3.053 -8.229 13.182 Atomic orbital electron populations 1.21802 0.89464 1.04474 1.03928 1.23280 0.97601 0.79457 1.01985 1.86464 1.23582 1.33598 1.84279 1.24111 0.80634 0.93317 0.72067 1.90697 1.61121 1.44077 1.44858 1.21780 0.89995 0.89518 1.05521 1.61503 1.04713 1.28315 1.28534 1.19382 0.96112 0.92918 0.82845 1.21397 0.94046 1.44789 0.95454 0.92092 1.25921 1.03530 0.95303 0.95055 1.70082 1.37890 1.48743 1.00946 0.85359 0.78970 0.78238 0.77900 1.19144 1.20833 1.19317 1.22584 0.99603 0.87253 1.00643 1.23666 0.99221 0.97783 1.03853 1.23141 1.03491 1.02529 0.90733 0.88083 0.91366 0.90517 0.91375 0.92831 0.83993 0.90224 1.01172 0.98095 0.92727 0.87775 0.87403 0.87532 0.87027 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.70 16 2 C 0.05 1.37 6.19 71.98 0.45 1.81 16 3 O -0.36 -11.76 10.22 -51.42 -0.53 -12.29 16 4 C 0.46 18.10 7.47 71.24 0.53 18.64 16 5 O -0.52 -25.53 14.92 21.96 0.33 -25.20 16 6 C 0.06 2.17 4.21 85.56 0.36 2.53 16 7 N -0.51 -22.75 4.30 -880.07 -3.79 -26.53 16 8 C 0.21 11.93 4.36 85.56 0.37 12.30 16 9 C -0.52 -30.88 8.28 25.60 0.21 -30.67 16 10 H 0.06 3.58 7.58 -2.91 -0.02 3.56 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 12 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16 13 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 17 C 0.01 0.30 5.72 44.92 0.26 0.56 16 18 C -0.21 -5.59 9.54 30.60 0.29 -5.30 16 19 C -0.16 -4.45 9.96 30.60 0.30 -4.14 16 20 H 0.10 1.29 8.14 -2.38 -0.02 1.28 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 24 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.14 3.95 5.83 -2.38 -0.01 3.93 16 26 H 0.08 2.71 7.87 -2.39 -0.02 2.69 16 27 H -0.03 -1.73 8.12 -2.39 -0.02 -1.75 16 28 H 0.00 0.06 6.51 -2.38 -0.02 0.05 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.10 4.43 7.21 -2.39 -0.02 4.41 16 31 H 0.11 2.59 5.94 -2.39 -0.01 2.58 16 32 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.10 2.56 7.66 -2.39 -0.02 2.54 16 Total: -1.00 -73.54 287.06 3.38 -70.16 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.07 Total: 9.44 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 3.98 Total: -5.54 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -3.50 Total: -84.69 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.20 Total: -37.49 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.54 3.38 -70.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038342279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.325 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds