Wall clock time and date at job start Sun Mar 29 2020 21:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47188 * 2 1 4 4 C 1.42903 * 113.99909 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.52374 * 30.08420 * 4 3 2 6 6 C 1.53042 * 109.49548 * 150.16057 * 4 3 2 7 7 C 1.53040 * 109.53731 * 181.31601 * 6 4 3 8 8 C 1.53628 * 109.24143 * 298.51209 * 7 6 4 9 9 N 1.46927 * 108.54445 * 54.85571 * 8 7 6 10 10 C 1.34772 * 120.63080 * 126.36810 * 9 8 7 11 11 O 1.21690 * 119.99961 * 174.42129 * 10 9 8 12 12 C 1.46370 * 120.00236 * 354.41459 * 10 9 8 13 13 H 1.08000 * 119.99781 * 5.64771 * 12 10 9 14 14 C 1.40049 * 120.00597 * 185.64447 * 12 10 9 15 15 N 1.30675 * 119.99601 * 5.34752 * 14 12 10 16 16 Si 1.86797 * 120.00561 * 185.34115 * 14 12 10 17 17 H 1.48500 * 109.47302 * 265.00689 * 16 14 12 18 18 H 1.48497 * 109.47504 * 145.00323 * 16 14 12 19 19 H 1.48503 * 109.46824 * 25.00304 * 16 14 12 20 20 C 1.46932 * 118.73677 * 306.09467 * 9 8 7 21 21 H 1.09002 * 109.47096 * 60.00095 * 1 2 3 22 22 H 1.09003 * 109.47257 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47453 * 300.00091 * 1 2 3 24 24 H 1.08992 * 109.47517 * 239.99783 * 2 1 3 25 25 H 1.09002 * 109.47096 * 119.99905 * 2 1 3 26 26 H 1.08994 * 109.45835 * 301.34145 * 6 4 3 27 27 H 1.09002 * 109.45799 * 61.30702 * 6 4 3 28 28 H 1.08999 * 109.49561 * 58.58808 * 7 6 4 29 29 H 1.08993 * 109.49676 * 178.65085 * 7 6 4 30 30 H 1.09000 * 109.73915 * 295.12227 * 8 7 6 31 31 H 1.08998 * 109.66478 * 174.54800 * 8 7 6 32 32 H 0.97005 * 119.99990 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.58485 * 173.64680 * 20 9 8 34 34 H 1.08997 * 109.58347 * 293.92878 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8644 0.6027 -0.5141 6 6 3.8416 2.7478 -0.7173 7 6 5.3681 2.8532 -0.7460 8 6 5.8986 2.9128 0.6945 9 7 5.3884 1.7471 1.4290 10 6 6.2323 0.9226 2.0805 11 8 5.7918 0.0205 2.7682 12 6 7.6787 1.1122 1.9607 13 1 8.0690 1.9654 1.4259 14 6 8.5566 0.1872 2.5396 15 7 8.0881 -0.8985 3.0957 16 14 10.3972 0.5054 2.5167 17 1 11.0041 -0.1836 1.3496 18 1 11.0048 -0.0130 3.7686 19 1 10.6458 1.9658 2.4136 20 6 3.9399 1.5007 1.4449 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.4593 2.7323 -1.7379 27 1 3.4283 3.6063 -0.1878 28 1 5.7833 1.9826 -1.2536 29 1 5.6603 3.7584 -1.2783 30 1 5.5539 3.8277 1.1763 31 1 6.9884 2.8905 0.6853 32 1 8.6962 -1.5394 3.4964 33 1 3.7369 0.5464 1.9309 34 1 3.4391 2.3016 1.9887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042424975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:23 Heat of formation + Delta-G solvation = -92.762464 kcal Electronic energy + Delta-G solvation = -16291.118304 eV Core-core repulsion = 13609.693520 eV Total energy + Delta-G solvation = -2681.424784 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00348 -37.23260 -35.30099 -32.59947 -31.77468 -30.91480 -29.24107 -26.36115 -24.19969 -22.91999 -22.03887 -20.52358 -18.89405 -16.91730 -16.01487 -15.76579 -15.48247 -14.67347 -14.31780 -14.07675 -13.82280 -13.24879 -12.77524 -12.70243 -12.40655 -12.10320 -11.84575 -11.54236 -11.30506 -11.14826 -10.99731 -10.89179 -10.66374 -10.50490 -10.25092 -10.06091 -9.87062 -9.26191 -8.86571 -7.60948 -7.22423 -6.24116 -4.66715 3.11559 3.19338 3.22969 3.80051 4.09430 4.52761 4.63885 5.15113 5.15504 5.26490 5.36553 5.43437 5.54384 5.64066 5.64917 5.77260 5.83242 6.01337 6.03576 6.12726 6.14905 6.20933 6.37660 6.42809 6.52998 6.60445 6.74205 7.43149 7.43988 7.66202 8.12085 8.33058 8.99627 9.41159 10.54669 10.72930 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.007114 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.582101 B = 3934.834902 C = 4467.705212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.387 6.387 4 C 0.077 3.923 5 H 0.060 0.940 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.118 3.882 9 N -0.640 5.640 10 C 0.560 3.440 11 O -0.579 6.579 12 C -0.545 4.545 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.263 1.263 20 C 0.104 3.896 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.269 0.731 33 H 0.081 0.919 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 4.959 -7.721 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.306 6.306 4 C 0.019 3.981 5 H 0.078 0.922 6 C -0.147 4.147 7 C -0.171 4.171 8 C -0.006 4.006 9 N -0.379 5.379 10 C 0.366 3.634 11 O -0.462 6.462 12 C -0.581 4.581 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.021 4.021 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.353 4.423 -7.225 11.218 hybrid contribution 1.023 -0.059 -0.091 1.029 sum -6.330 4.365 -7.316 10.613 Atomic orbital electron populations 1.21727 0.94154 1.01910 1.02749 1.22477 0.95053 0.84286 1.00350 1.87830 1.21464 1.26115 1.95184 1.22541 0.80000 0.98312 0.97267 0.92196 1.21524 0.96199 0.97062 0.99899 1.22025 0.94448 1.01961 0.98675 1.21575 1.00720 0.88518 0.89783 1.48152 1.04270 1.29213 1.56291 1.18279 0.86735 0.80012 0.78410 1.90584 1.78210 1.34582 1.42855 1.20977 0.89180 1.10776 1.37181 0.90769 1.25731 1.00349 0.93970 0.93108 1.70005 1.35814 1.07112 1.26802 0.86375 0.82828 0.79509 0.78186 1.19829 1.20365 1.18745 1.21514 0.83747 1.02098 0.94712 0.92213 0.91390 0.91941 0.93709 0.93023 0.92111 0.91527 0.91542 0.91335 0.93864 0.88627 0.92049 0.90015 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.16 0.38 -1.29 16 2 C 0.06 0.79 6.47 37.16 0.24 1.03 16 3 O -0.39 -6.45 9.99 -35.23 -0.35 -6.80 16 4 C 0.08 1.37 2.76 -26.61 -0.07 1.29 16 5 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16 6 C -0.11 -1.66 5.53 -26.69 -0.15 -1.81 16 7 C -0.13 -2.04 6.10 -26.38 -0.16 -2.20 16 8 C 0.12 2.22 6.38 -3.48 -0.02 2.19 16 9 N -0.64 -14.90 2.97 -174.16 -0.52 -15.42 16 10 C 0.56 16.09 7.60 -12.99 -0.10 15.99 16 11 O -0.58 -18.94 14.52 5.20 0.08 -18.87 16 12 C -0.54 -15.20 8.87 -35.63 -0.32 -15.52 16 13 H 0.07 1.87 5.65 -52.49 -0.30 1.58 16 14 C 0.09 2.44 5.49 -17.36 -0.10 2.35 16 15 N -0.77 -22.97 11.88 55.55 0.66 -22.31 16 16 Si 0.91 19.89 29.56 -169.99 -5.03 14.87 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 C 0.10 2.18 6.03 -3.71 -0.02 2.16 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.86 5.30 -51.93 -0.28 1.58 16 32 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 33 H 0.08 1.92 6.92 -51.93 -0.36 1.56 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 279.08 15.07 4.21 4.21 Total: -1.00 -33.40 279.08 -6.38 -39.77 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.11 Total: 0.35 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.31 Total: 4.19 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.14 Total: -37.73 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.28 Total: -25.66 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.40 -6.38 -39.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042424975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.988 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds