Wall clock time and date at job start Sun Mar 29 2020 21:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47188 * 2 1 4 4 C 1.42903 * 113.99909 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.52374 * 30.08420 * 4 3 2 6 6 C 1.53042 * 109.49548 * 150.16057 * 4 3 2 7 7 C 1.53040 * 109.53731 * 181.31601 * 6 4 3 8 8 C 1.53628 * 109.24143 * 298.51209 * 7 6 4 9 9 N 1.46927 * 108.54445 * 54.85571 * 8 7 6 10 10 C 1.34772 * 120.63080 * 126.36810 * 9 8 7 11 11 O 1.21690 * 119.99961 * 174.42129 * 10 9 8 12 12 C 1.46370 * 120.00236 * 354.41459 * 10 9 8 13 13 H 1.08000 * 119.99781 * 5.64771 * 12 10 9 14 14 C 1.40049 * 120.00597 * 185.64447 * 12 10 9 15 15 N 1.30675 * 119.99601 * 5.34752 * 14 12 10 16 16 Si 1.86797 * 120.00561 * 185.34115 * 14 12 10 17 17 H 1.48500 * 109.47302 * 265.00689 * 16 14 12 18 18 H 1.48497 * 109.47504 * 145.00323 * 16 14 12 19 19 H 1.48503 * 109.46824 * 25.00304 * 16 14 12 20 20 C 1.46932 * 118.73677 * 306.09467 * 9 8 7 21 21 H 1.09002 * 109.47096 * 60.00095 * 1 2 3 22 22 H 1.09003 * 109.47257 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47453 * 300.00091 * 1 2 3 24 24 H 1.08992 * 109.47517 * 239.99783 * 2 1 3 25 25 H 1.09002 * 109.47096 * 119.99905 * 2 1 3 26 26 H 1.08994 * 109.45835 * 301.34145 * 6 4 3 27 27 H 1.09002 * 109.45799 * 61.30702 * 6 4 3 28 28 H 1.08999 * 109.49561 * 58.58808 * 7 6 4 29 29 H 1.08993 * 109.49676 * 178.65085 * 7 6 4 30 30 H 1.09000 * 109.73915 * 295.12227 * 8 7 6 31 31 H 1.08998 * 109.66478 * 174.54800 * 8 7 6 32 32 H 0.97005 * 119.99990 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.58485 * 173.64680 * 20 9 8 34 34 H 1.08997 * 109.58347 * 293.92878 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8644 0.6027 -0.5141 6 6 3.8416 2.7478 -0.7173 7 6 5.3681 2.8532 -0.7460 8 6 5.8986 2.9128 0.6945 9 7 5.3884 1.7471 1.4290 10 6 6.2323 0.9226 2.0805 11 8 5.7918 0.0205 2.7682 12 6 7.6787 1.1122 1.9607 13 1 8.0690 1.9654 1.4259 14 6 8.5566 0.1872 2.5396 15 7 8.0881 -0.8985 3.0957 16 14 10.3972 0.5054 2.5167 17 1 11.0041 -0.1836 1.3496 18 1 11.0048 -0.0130 3.7686 19 1 10.6458 1.9658 2.4136 20 6 3.9399 1.5007 1.4449 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.4593 2.7323 -1.7379 27 1 3.4283 3.6063 -0.1878 28 1 5.7833 1.9826 -1.2536 29 1 5.6603 3.7584 -1.2783 30 1 5.5539 3.8277 1.1763 31 1 6.9884 2.8905 0.6853 32 1 8.6962 -1.5394 3.4964 33 1 3.7369 0.5464 1.9309 34 1 3.4391 2.3016 1.9887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042424975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:23 Heat of formation + Delta-G solvation = -116.162228 kcal Electronic energy + Delta-G solvation = -16292.132994 eV Core-core repulsion = 13609.693520 eV Total energy + Delta-G solvation = -2682.439473 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60813 -38.92365 -37.04234 -34.71054 -33.30231 -32.28273 -30.72109 -28.36256 -25.89990 -24.17721 -23.38792 -22.19185 -20.62856 -18.63770 -17.87089 -17.47029 -16.85545 -16.32703 -15.88364 -15.76311 -15.21791 -14.95457 -14.43082 -14.01529 -13.78840 -13.56720 -13.32086 -13.25160 -12.87852 -12.75773 -12.62283 -12.35573 -12.08230 -11.98579 -11.86116 -11.55819 -11.47032 -10.93520 -10.66873 -9.82072 -9.11001 -8.32748 -6.85496 1.39793 1.41761 1.57884 2.21139 2.41429 2.50375 2.98006 3.54474 3.80391 3.91439 4.06864 4.11973 4.22855 4.25591 4.31879 4.42979 4.58959 4.69319 4.78584 4.90418 4.92181 4.99913 5.01204 5.06102 5.14980 5.23719 5.39957 5.41421 5.73458 6.07230 6.20275 6.38209 6.86091 7.39196 8.43068 8.64801 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.007114 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.582101 B = 3934.834902 C = 4467.705212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 O -0.389 6.389 4 C 0.087 3.913 5 H 0.045 0.955 6 C -0.103 4.103 7 C -0.122 4.122 8 C 0.110 3.890 9 N -0.643 5.643 10 C 0.538 3.462 11 O -0.637 6.637 12 C -0.567 4.567 13 H 0.099 0.901 14 C 0.028 3.972 15 N -0.825 5.825 16 Si 0.998 3.002 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.245 1.245 20 C 0.104 3.896 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.274 0.726 33 H 0.042 0.958 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 6.974 -9.642 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 O -0.308 6.308 4 C 0.028 3.972 5 H 0.063 0.937 6 C -0.140 4.140 7 C -0.161 4.161 8 C -0.013 4.013 9 N -0.380 5.380 10 C 0.345 3.655 11 O -0.525 6.525 12 C -0.603 4.603 13 H 0.117 0.883 14 C -0.187 4.187 15 N -0.455 5.455 16 Si 0.817 3.183 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.168 1.168 20 C -0.020 4.020 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.777 6.494 -9.194 13.139 hybrid contribution 0.728 -0.685 0.522 1.127 sum -6.049 5.809 -8.672 12.064 Atomic orbital electron populations 1.21721 0.91415 1.03481 1.03169 1.22706 0.97286 0.83274 0.99821 1.87831 1.20526 1.27432 1.94997 1.22381 0.80603 0.99585 0.94664 0.93683 1.21528 0.96012 0.95463 1.01016 1.21970 0.94362 1.03517 0.96211 1.21868 1.00458 0.87220 0.91737 1.48048 1.04696 1.29631 1.55672 1.18773 0.88136 0.80135 0.78451 1.90530 1.79320 1.37190 1.45419 1.21517 0.89253 1.11850 1.37707 0.88329 1.27045 1.06745 0.93091 0.91797 1.70188 1.38495 1.08682 1.28122 0.85006 0.74466 0.80351 0.78503 1.18481 1.20059 1.16764 1.21577 0.82911 1.00254 0.97289 0.91027 0.89307 0.92203 0.92792 0.95120 0.89524 0.90463 0.92734 0.87105 0.91813 0.89422 0.91577 0.93910 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.28 71.98 0.74 -2.23 16 2 C 0.05 1.30 6.47 71.98 0.47 1.77 16 3 O -0.39 -12.64 9.99 -148.98 -1.49 -14.13 16 4 C 0.09 3.02 2.76 30.67 0.08 3.10 16 5 H 0.05 1.69 7.79 -2.39 -0.02 1.68 16 6 C -0.10 -2.82 5.53 30.62 0.17 -2.65 16 7 C -0.12 -3.39 6.10 30.82 0.19 -3.21 16 8 C 0.11 3.93 6.38 86.51 0.55 4.48 16 9 N -0.64 -30.48 2.97 -823.14 -2.44 -32.92 16 10 C 0.54 32.18 7.60 86.36 0.66 32.83 16 11 O -0.64 -44.16 14.52 -4.32 -0.06 -44.23 16 12 C -0.57 -32.07 8.87 24.83 0.22 -31.85 16 13 H 0.10 4.90 5.65 -2.91 -0.02 4.88 16 14 C 0.03 1.57 5.49 85.30 0.47 2.04 16 15 N -0.83 -51.07 11.88 21.84 0.26 -50.81 16 16 Si 1.00 40.58 29.56 68.60 2.03 42.60 16 17 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 18 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16 20 C 0.10 4.51 6.03 86.36 0.52 5.03 16 21 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.03 0.99 8.02 -2.39 -0.02 0.97 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 3.26 5.30 -2.39 -0.01 3.25 16 32 H 0.27 15.35 8.29 -92.70 -0.77 14.58 16 33 H 0.04 2.15 6.92 -2.39 -0.02 2.14 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -76.45 279.08 3.43 -73.02 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.07 Total: 17.14 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 4.07 Total: 9.32 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.18 Total: -83.73 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -1.55 Total: -58.35 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Total: -76.45 3.43 -73.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042424975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.143 kcal (2) G-P(sol) polarization free energy of solvation -76.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds