Wall clock time and date at job start Sun Mar 29 2020 21:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 116.99762 * 2 1 4 4 O 1.20827 * 119.99597 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00194 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47362 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.70534 * 305.36231 * 6 5 3 8 8 C 1.53194 * 109.59021 * 185.00203 * 6 5 3 9 9 C 1.53039 * 109.31487 * 185.58271 * 8 6 5 10 10 C 1.53039 * 109.52701 * 61.36926 * 9 8 6 11 11 C 1.53190 * 109.31589 * 298.61597 * 10 9 8 12 12 N 1.46928 * 109.58118 * 65.71183 * 6 5 3 13 13 C 1.36933 * 120.63467 * 353.38054 * 12 6 5 14 14 H 1.07998 * 120.00552 * 41.80025 * 13 12 6 15 15 C 1.38815 * 119.99987 * 221.81169 * 13 12 6 16 16 N 1.31622 * 119.99865 * 214.00115 * 15 13 12 17 17 Si 1.86804 * 119.99972 * 33.99351 * 15 13 12 18 18 H 1.48497 * 109.46847 * 84.71517 * 17 15 13 19 19 H 1.48501 * 109.46931 * 204.71095 * 17 15 13 20 20 H 1.48491 * 109.47368 * 324.71306 * 17 15 13 21 21 H 1.09000 * 109.46919 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47290 * 299.99532 * 1 2 3 23 23 H 1.08994 * 109.47566 * 59.99847 * 1 2 3 24 24 H 1.09003 * 109.47002 * 60.00320 * 5 3 2 25 25 H 1.08995 * 109.47604 * 300.00667 * 5 3 2 26 26 H 1.08997 * 109.49866 * 65.62428 * 8 6 5 27 27 H 1.09001 * 109.52033 * 305.54803 * 8 6 5 28 28 H 1.08993 * 109.46014 * 181.38637 * 9 8 6 29 29 H 1.08998 * 109.45743 * 301.36045 * 9 8 6 30 30 H 1.09000 * 109.49661 * 58.58217 * 10 9 8 31 31 H 1.09000 * 109.49903 * 178.67707 * 10 9 8 32 32 H 1.08998 * 109.59974 * 294.87181 * 11 10 9 33 33 H 1.09005 * 109.59048 * 174.43517 * 11 10 9 34 34 H 0.97002 * 119.99766 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2751 -0.0006 6 6 4.0000 2.7423 -0.0011 7 1 3.5343 3.2629 -0.8379 8 6 5.5243 2.8272 -0.1275 9 6 5.9633 4.2866 0.0124 10 6 5.5632 4.8110 1.3933 11 6 4.0393 4.7490 1.5369 12 7 3.5940 3.3762 1.2607 13 6 2.8153 2.7008 2.1620 14 1 3.0099 1.6590 2.3699 15 6 1.7755 3.3550 2.8084 16 7 1.4680 3.0377 4.0482 17 14 0.8127 4.6857 1.9186 18 1 -0.2646 4.0605 1.1100 19 1 0.2118 5.6107 2.9129 20 1 1.7253 5.4438 1.0256 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 3.9556 0.7812 -0.8909 25 1 3.9564 0.7807 0.8890 26 1 5.8303 2.4470 -1.1021 27 1 5.9887 2.2308 0.6578 28 1 7.0452 4.3529 -0.1018 29 1 5.4794 4.8868 -0.7582 30 1 6.0268 4.1958 2.1644 31 1 5.8968 5.8431 1.5012 32 1 3.5769 5.4331 0.8254 33 1 3.7562 5.0277 2.5519 34 1 0.7417 3.4951 4.5000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048400717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:08 Heat of formation + Delta-G solvation = -63.937856 kcal Electronic energy + Delta-G solvation = -17166.288804 eV Core-core repulsion = 14486.113949 eV Total energy + Delta-G solvation = -2680.174855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.67001 -37.75239 -35.47991 -32.93405 -32.17815 -30.57253 -28.14709 -26.35401 -24.91065 -22.27927 -21.49842 -19.78762 -19.16477 -16.75084 -16.38497 -15.87904 -15.63656 -15.02774 -14.37420 -13.69876 -13.47367 -13.19546 -12.95853 -12.59028 -12.37346 -11.98767 -11.55894 -11.47580 -11.38008 -11.07485 -10.64484 -10.38307 -10.33699 -10.12704 -9.91645 -9.77598 -9.60669 -9.38027 -9.35522 -8.19546 -6.55332 -5.96435 -3.27749 3.21359 3.52567 3.64301 3.69395 3.82433 4.76319 5.00859 5.33926 5.40674 5.49331 5.58633 5.61472 5.64141 5.75267 5.88290 5.97627 6.00362 6.13798 6.18920 6.27775 6.39134 6.49476 6.55950 6.61649 6.71957 6.92133 6.99262 7.18045 7.26156 8.14134 8.43240 8.79597 9.09443 9.84283 10.32627 11.18197 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.015503 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.437463 B = 1805.641241 C = 2666.765177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.375 6.375 3 C 0.467 3.533 4 O -0.470 6.470 5 C -0.095 4.095 6 C 0.177 3.823 7 H 0.035 0.965 8 C -0.129 4.129 9 C -0.108 4.108 10 C -0.137 4.137 11 C 0.147 3.853 12 N -0.589 5.589 13 C -0.270 4.270 14 H 0.067 0.933 15 C 0.057 3.943 16 N -0.888 5.888 17 Si 0.867 3.133 18 H -0.283 1.283 19 H -0.312 1.312 20 H -0.265 1.265 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 -2.793 -8.862 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.294 6.294 3 C 0.308 3.692 4 O -0.353 6.353 5 C -0.133 4.133 6 C 0.071 3.929 7 H 0.052 0.948 8 C -0.168 4.168 9 C -0.146 4.146 10 C -0.177 4.177 11 C 0.021 3.979 12 N -0.313 5.313 13 C -0.398 4.398 14 H 0.084 0.916 15 C -0.146 4.146 16 N -0.527 5.527 17 Si 0.696 3.304 18 H -0.210 1.210 19 H -0.241 1.241 20 H -0.190 1.190 21 H 0.107 0.893 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.124 0.876 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.431 -2.475 -8.702 10.074 hybrid contribution -0.984 0.788 -0.337 1.305 sum 3.447 -1.687 -9.039 9.820 Atomic orbital electron populations 1.23031 0.77829 1.02239 1.02211 1.86442 1.22365 1.35008 1.85539 1.23377 0.91906 0.80984 0.72908 1.90601 1.66506 1.35796 1.42412 1.21371 0.88133 0.99801 1.03983 1.20418 0.91769 0.90047 0.90702 0.94786 1.21995 0.97665 0.96778 1.00360 1.21358 0.99022 0.96392 0.97806 1.22056 0.99575 0.99265 0.96754 1.21238 0.90714 0.86559 0.99369 1.44217 1.58100 1.12935 1.16087 1.18324 1.08585 0.97288 1.15625 0.91604 1.25537 0.96527 0.97429 0.95112 1.70083 1.29688 1.43663 1.09305 0.87025 0.82111 0.81414 0.79858 1.21003 1.24080 1.18968 0.89284 0.91947 0.92933 0.89533 0.87638 0.92928 0.91821 0.93340 0.92883 0.92029 0.93283 0.95991 0.91733 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.55 101.05 1.07 1.74 16 2 O -0.38 -7.19 10.57 -39.27 -0.41 -7.61 16 3 C 0.47 9.92 6.44 36.00 0.23 10.15 16 4 O -0.47 -11.67 11.74 -18.75 -0.22 -11.89 16 5 C -0.09 -1.74 4.84 -27.88 -0.13 -1.87 16 6 C 0.18 3.51 2.47 -67.60 -0.17 3.34 16 7 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 8 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 9 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 10 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 11 C 0.15 3.29 4.58 -3.71 -0.02 3.27 16 12 N -0.59 -14.07 2.28 -164.77 -0.38 -14.44 16 13 C -0.27 -7.46 6.32 -15.06 -0.10 -7.56 16 14 H 0.07 1.94 6.49 -52.49 -0.34 1.60 16 15 C 0.06 1.66 4.78 -17.43 -0.08 1.58 16 16 N -0.89 -27.42 13.97 55.49 0.78 -26.65 16 17 Si 0.87 23.88 25.33 -169.99 -4.31 19.57 16 18 H -0.28 -8.12 7.11 56.52 0.40 -7.72 16 19 H -0.31 -8.64 7.11 56.52 0.40 -8.24 16 20 H -0.26 -7.08 5.19 56.52 0.29 -6.78 16 21 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.06 1.17 8.13 -51.92 -0.42 0.74 16 23 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 24 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.11 1.98 7.07 -51.93 -0.37 1.62 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.51 6.67 -51.93 -0.35 0.16 16 33 H 0.06 1.57 7.04 -51.93 -0.37 1.21 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 265.56 15.07 4.00 4.00 Total: -1.00 -32.77 265.56 -5.50 -38.27 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -5.30 Total: -5.20 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.34 Total: 3.94 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.40 Total: -41.09 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.64 Total: -19.50 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.31 Total: 19.57 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.77 -5.50 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048400717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.664 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds