Wall clock time and date at job start Sun Mar 29 2020 21:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 116.99762 * 2 1 4 4 O 1.20827 * 119.99597 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00194 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47362 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.70534 * 305.36231 * 6 5 3 8 8 C 1.53194 * 109.59021 * 185.00203 * 6 5 3 9 9 C 1.53039 * 109.31487 * 185.58271 * 8 6 5 10 10 C 1.53039 * 109.52701 * 61.36926 * 9 8 6 11 11 C 1.53190 * 109.31589 * 298.61597 * 10 9 8 12 12 N 1.46928 * 109.58118 * 65.71183 * 6 5 3 13 13 C 1.36933 * 120.63467 * 353.38054 * 12 6 5 14 14 H 1.07998 * 120.00552 * 41.80025 * 13 12 6 15 15 C 1.38815 * 119.99987 * 221.81169 * 13 12 6 16 16 N 1.31622 * 119.99865 * 214.00115 * 15 13 12 17 17 Si 1.86804 * 119.99972 * 33.99351 * 15 13 12 18 18 H 1.48497 * 109.46847 * 84.71517 * 17 15 13 19 19 H 1.48501 * 109.46931 * 204.71095 * 17 15 13 20 20 H 1.48491 * 109.47368 * 324.71306 * 17 15 13 21 21 H 1.09000 * 109.46919 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47290 * 299.99532 * 1 2 3 23 23 H 1.08994 * 109.47566 * 59.99847 * 1 2 3 24 24 H 1.09003 * 109.47002 * 60.00320 * 5 3 2 25 25 H 1.08995 * 109.47604 * 300.00667 * 5 3 2 26 26 H 1.08997 * 109.49866 * 65.62428 * 8 6 5 27 27 H 1.09001 * 109.52033 * 305.54803 * 8 6 5 28 28 H 1.08993 * 109.46014 * 181.38637 * 9 8 6 29 29 H 1.08998 * 109.45743 * 301.36045 * 9 8 6 30 30 H 1.09000 * 109.49661 * 58.58217 * 10 9 8 31 31 H 1.09000 * 109.49903 * 178.67707 * 10 9 8 32 32 H 1.08998 * 109.59974 * 294.87181 * 11 10 9 33 33 H 1.09005 * 109.59048 * 174.43517 * 11 10 9 34 34 H 0.97002 * 119.99766 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 0.0005 5 6 3.5662 1.2751 -0.0006 6 6 4.0000 2.7423 -0.0011 7 1 3.5343 3.2629 -0.8379 8 6 5.5243 2.8272 -0.1275 9 6 5.9633 4.2866 0.0124 10 6 5.5632 4.8110 1.3933 11 6 4.0393 4.7490 1.5369 12 7 3.5940 3.3762 1.2607 13 6 2.8153 2.7008 2.1620 14 1 3.0099 1.6590 2.3699 15 6 1.7755 3.3550 2.8084 16 7 1.4680 3.0377 4.0482 17 14 0.8127 4.6857 1.9186 18 1 -0.2646 4.0605 1.1100 19 1 0.2118 5.6107 2.9129 20 1 1.7253 5.4438 1.0256 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 3.9556 0.7812 -0.8909 25 1 3.9564 0.7807 0.8890 26 1 5.8303 2.4470 -1.1021 27 1 5.9887 2.2308 0.6578 28 1 7.0452 4.3529 -0.1018 29 1 5.4794 4.8868 -0.7582 30 1 6.0268 4.1958 2.1644 31 1 5.8968 5.8431 1.5012 32 1 3.5769 5.4331 0.8254 33 1 3.7562 5.0277 2.5519 34 1 0.7417 3.4951 4.5000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048400717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:07 Heat of formation + Delta-G solvation = -85.892706 kcal Electronic energy + Delta-G solvation = -17167.240837 eV Core-core repulsion = 14486.113949 eV Total energy + Delta-G solvation = -2681.126888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30917 -39.35001 -37.12087 -34.86981 -33.76659 -32.47188 -29.63645 -27.84211 -26.76392 -23.98551 -23.10631 -21.30129 -20.86087 -18.55072 -18.16254 -17.51042 -17.21758 -16.94789 -16.12710 -15.39033 -14.97333 -14.82952 -14.54241 -14.40918 -14.11031 -13.58282 -13.28924 -13.14298 -12.87231 -12.66349 -12.48866 -12.32797 -12.03450 -11.59320 -11.56729 -11.49725 -11.26512 -11.17541 -11.02156 -10.40757 -8.51935 -8.23777 -5.46363 1.27397 1.43212 1.54074 1.70386 2.06114 2.52248 3.05437 3.43507 3.96988 4.08396 4.17876 4.27749 4.32915 4.38716 4.44400 4.58782 4.61126 4.68552 4.74600 4.81031 5.02758 5.05401 5.14878 5.25342 5.34085 5.38327 5.42648 5.67752 5.71250 5.97860 6.20061 7.09094 7.16148 7.71517 8.22891 8.95964 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.015503 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.437463 B = 1805.641241 C = 2666.765177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.460 3.540 4 O -0.515 6.515 5 C -0.094 4.094 6 C 0.169 3.831 7 H 0.026 0.974 8 C -0.120 4.120 9 C -0.106 4.106 10 C -0.128 4.128 11 C 0.141 3.859 12 N -0.604 5.604 13 C -0.230 4.230 14 H 0.046 0.954 15 C 0.008 3.992 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.304 1.304 19 H -0.318 1.318 20 H -0.255 1.255 21 H 0.134 0.866 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.138 0.862 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.014 0.986 33 H 0.034 0.966 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -3.341 -11.045 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C 0.303 3.697 4 O -0.402 6.402 5 C -0.131 4.131 6 C 0.064 3.936 7 H 0.044 0.956 8 C -0.159 4.159 9 C -0.144 4.144 10 C -0.167 4.167 11 C 0.016 3.984 12 N -0.329 5.329 13 C -0.360 4.360 14 H 0.063 0.937 15 C -0.190 4.190 16 N -0.577 5.577 17 Si 0.740 3.260 18 H -0.233 1.233 19 H -0.247 1.247 20 H -0.180 1.180 21 H 0.152 0.848 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.156 0.844 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.733 -3.024 -10.927 13.186 hybrid contribution -1.662 0.873 0.258 1.895 sum 5.071 -2.151 -10.669 12.007 Atomic orbital electron populations 1.23279 0.76444 1.04860 1.01073 1.86438 1.23769 1.33997 1.84931 1.24102 0.93209 0.80825 0.71527 1.90580 1.67688 1.37225 1.44674 1.21506 0.86101 0.99333 1.06157 1.20707 0.94585 0.90344 0.87985 0.95597 1.21928 0.93957 0.97390 1.02594 1.21387 1.01182 0.95894 0.95924 1.21934 0.95404 1.00939 0.98440 1.21242 0.94216 0.85591 0.97387 1.44450 1.57598 1.13354 1.17474 1.18247 1.07047 0.96255 1.14435 0.93695 1.25914 0.98053 0.99338 0.95716 1.70143 1.31130 1.45857 1.10537 0.86335 0.80995 0.79949 0.78737 1.23255 1.24737 1.17963 0.84800 0.95022 0.92165 0.84418 0.88092 0.88979 0.91872 0.89904 0.92604 0.92668 0.90970 0.96775 0.94751 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.55 113.37 1.20 2.39 16 2 O -0.37 -13.86 10.57 -51.47 -0.54 -14.40 16 3 C 0.46 19.10 6.44 71.23 0.46 19.56 16 4 O -0.51 -25.67 11.74 21.96 0.26 -25.41 16 5 C -0.09 -3.17 4.84 29.85 0.14 -3.03 16 6 C 0.17 6.26 2.47 44.98 0.11 6.37 16 7 H 0.03 1.03 7.95 -2.39 -0.02 1.02 16 8 C -0.12 -3.31 5.37 30.67 0.16 -3.15 16 9 C -0.11 -2.87 5.88 30.62 0.18 -2.69 16 10 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 11 C 0.14 6.20 4.58 86.36 0.40 6.60 16 12 N -0.60 -28.34 2.28 -675.20 -1.54 -29.88 16 13 C -0.23 -12.84 6.32 84.03 0.53 -12.31 16 14 H 0.05 2.70 6.49 -2.91 -0.02 2.68 16 15 C 0.01 0.46 4.78 84.86 0.41 0.87 16 16 N -0.93 -59.67 13.97 21.65 0.30 -59.37 16 17 Si 0.91 50.94 25.33 68.60 1.74 52.68 16 18 H -0.30 -17.89 7.11 99.48 0.71 -17.18 16 19 H -0.32 -17.90 7.11 99.48 0.71 -17.19 16 20 H -0.25 -13.63 5.19 99.48 0.52 -13.11 16 21 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 22 H 0.03 1.20 8.13 -2.38 -0.02 1.18 16 23 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 24 H 0.14 3.26 8.14 -2.39 -0.02 3.24 16 25 H 0.10 3.58 7.07 -2.39 -0.02 3.57 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.01 0.65 6.67 -2.39 -0.02 0.63 16 33 H 0.03 1.69 7.04 -2.38 -0.02 1.67 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -73.50 265.56 4.87 -68.63 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: 0.88 Total: -2.80 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 3.77 Total: 10.55 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -1.24 Total: -89.25 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.29 Total: -39.81 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 1.74 Total: 52.68 kcal Total: -73.50 4.87 -68.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048400717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.260 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds