Wall clock time and date at job start Sun Mar 29 2020 21:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47242 * 2 1 4 4 C 1.37102 * 119.99903 * 263.15588 * 3 2 1 5 5 H 1.07998 * 119.99787 * 195.74356 * 4 3 2 6 6 C 1.38947 * 120.00211 * 15.75114 * 4 3 2 7 7 N 1.31409 * 119.99984 * 16.90413 * 6 4 3 8 8 Si 1.86801 * 120.00102 * 196.90249 * 6 4 3 9 9 H 1.48497 * 109.46838 * 89.99702 * 8 6 4 10 10 H 1.48492 * 109.47084 * 210.00083 * 8 6 4 11 11 H 1.48503 * 109.46854 * 329.99915 * 8 6 4 12 12 C 1.34781 * 119.99973 * 83.15937 * 3 2 1 13 13 O 1.21290 * 119.99924 * 356.81043 * 12 3 2 14 14 C 1.50694 * 119.99980 * 176.80918 * 12 3 2 15 15 H 1.09005 * 109.52614 * 50.98992 * 14 12 3 16 16 C 1.53174 * 109.52504 * 171.17888 * 14 12 3 17 17 C 1.53177 * 109.04119 * 176.88629 * 16 14 12 18 18 C 1.53089 * 109.16028 * 303.01746 * 17 16 14 19 19 O 1.42900 * 109.41430 * 57.61168 * 18 17 16 20 20 C 1.42901 * 114.09907 * 298.83595 * 19 18 17 21 21 H 1.09004 * 109.47296 * 51.53493 * 1 2 3 22 22 H 1.08991 * 109.47655 * 171.53752 * 1 2 3 23 23 H 1.09000 * 109.46848 * 291.54387 * 1 2 3 24 24 H 1.09000 * 109.47173 * 120.00474 * 2 1 3 25 25 H 1.08998 * 109.46628 * 240.00126 * 2 1 3 26 26 H 0.96994 * 120.00452 * 180.02562 * 7 6 4 27 27 H 1.09006 * 109.53811 * 296.75528 * 16 14 12 28 28 H 1.09003 * 109.54420 * 57.01559 * 16 14 12 29 29 H 1.08995 * 109.52361 * 183.11013 * 17 16 14 30 30 H 1.09003 * 109.57091 * 62.95254 * 17 16 14 31 31 H 1.08995 * 109.48620 * 297.62415 * 18 17 16 32 32 H 1.08999 * 109.48574 * 177.59427 * 18 17 16 33 33 H 1.09005 * 109.48304 * 301.18334 * 20 19 18 34 34 H 1.08994 * 109.49434 * 181.15150 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3803 1.9803 -1.1789 5 1 2.9697 2.8851 -1.1660 6 6 1.9886 1.4234 -2.3901 7 7 1.0171 0.5392 -2.4232 8 14 2.8431 1.9317 -3.9716 9 1 4.0016 1.0359 -4.2181 10 1 1.8887 1.8300 -5.1046 11 1 3.3184 3.3332 -3.8489 12 6 2.1119 2.0629 1.1589 13 8 1.7377 1.5534 2.1941 14 6 2.6816 3.4580 1.1686 15 1 2.1778 4.0624 0.4143 16 6 2.4754 4.0855 2.5506 17 6 3.1265 5.4719 2.5720 18 6 4.6080 5.3369 2.2104 19 8 4.7294 4.7184 0.9279 20 6 4.1803 3.4009 0.8611 21 1 -0.3634 0.6393 -0.8047 22 1 -0.3634 -1.0164 -0.1512 23 1 -0.3633 0.3774 0.9559 24 1 1.8933 -0.5139 0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 0.7439 0.1502 -3.2686 27 1 1.4084 4.1806 2.7523 28 1 2.9366 3.4543 3.3102 29 1 3.0327 5.9030 3.5687 30 1 2.6321 6.1187 1.8473 31 1 5.1105 4.7239 2.9586 32 1 5.0669 6.3251 2.1823 33 1 4.6771 2.7624 1.5918 34 1 4.3310 2.9943 -0.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062235341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:38 Heat of formation + Delta-G solvation = -81.413198 kcal Electronic energy + Delta-G solvation = -16848.014479 eV Core-core repulsion = 14167.081837 eV Total energy + Delta-G solvation = -2680.932642 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.51168 -37.81162 -35.09157 -33.01765 -31.58025 -31.20984 -29.20010 -24.95692 -24.63053 -23.71855 -21.88259 -19.91169 -18.97120 -17.14324 -16.07768 -15.77712 -15.38553 -14.48993 -14.46547 -14.33358 -13.55348 -13.26604 -12.98565 -12.38458 -12.29432 -12.06958 -11.74552 -11.38560 -11.14033 -10.89278 -10.83710 -10.62523 -10.48492 -10.40305 -10.12902 -9.83870 -9.71107 -9.14135 -8.93042 -8.31823 -7.75359 -6.35708 -3.93546 3.10072 3.20965 3.23121 3.85016 4.05761 4.23899 4.79477 5.02267 5.17612 5.22580 5.34659 5.59375 5.61700 5.79417 5.91138 6.08690 6.12325 6.26612 6.34178 6.45134 6.61596 6.66362 6.79338 6.81546 6.89181 7.05778 7.34704 7.41506 7.55429 7.77348 7.82228 8.42796 9.05340 9.52650 9.92866 10.61044 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.010809 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.840139 B = 2589.916194 C = 3447.665070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.140 3.860 3 N -0.438 5.438 4 C -0.341 4.341 5 H 0.105 0.895 6 C 0.036 3.964 7 N -0.860 5.860 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.458 3.542 13 O -0.609 6.609 14 C -0.122 4.122 15 H 0.095 0.905 16 C -0.099 4.099 17 C -0.155 4.155 18 C 0.059 3.941 19 O -0.383 6.383 20 C 0.068 3.932 21 H 0.086 0.914 22 H 0.033 0.967 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.091 0.909 26 H 0.268 0.732 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 5.518 3.258 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 N -0.156 5.156 4 C -0.468 4.468 5 H 0.122 0.878 6 C -0.169 4.169 7 N -0.498 5.498 8 Si 0.744 3.256 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.192 1.192 12 C 0.246 3.754 13 O -0.496 6.496 14 C -0.144 4.144 15 H 0.113 0.887 16 C -0.137 4.137 17 C -0.193 4.193 18 C -0.018 4.018 19 O -0.302 6.302 20 C -0.008 4.008 21 H 0.104 0.896 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.979 5.205 3.417 7.389 hybrid contribution 0.078 0.050 -0.734 0.740 sum 4.057 5.255 2.683 7.160 Atomic orbital electron populations 1.21953 0.96756 1.00331 1.00500 1.21110 0.94573 0.82989 0.99663 1.43842 1.55027 1.11230 1.05484 1.19852 1.32894 1.11216 0.82825 0.87752 1.25264 0.95265 0.96915 0.99412 1.70153 1.24030 1.28776 1.26811 0.86059 0.79120 0.79322 0.81059 1.20271 1.20961 1.19240 1.19871 0.84239 0.87134 0.84114 1.90510 1.55520 1.70618 1.32937 1.21615 0.97542 0.96604 0.98638 0.88733 1.21353 1.01204 0.94518 0.96612 1.22222 0.96938 0.98428 1.01725 1.22532 0.95567 0.97716 0.85980 1.87925 1.80201 1.30605 1.31471 1.22730 0.91329 0.83126 1.03651 0.89561 0.94833 0.95748 0.94895 0.89126 0.92178 0.91571 0.91449 0.91335 0.91260 0.93592 0.89524 0.93611 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.46 37.16 0.35 -2.92 16 2 C 0.14 3.45 5.20 -4.04 -0.02 3.43 16 3 N -0.44 -11.02 2.64 -114.82 -0.30 -11.32 16 4 C -0.34 -8.41 8.45 -14.93 -0.13 -8.53 16 5 H 0.11 2.45 4.79 -52.49 -0.25 2.20 16 6 C 0.04 0.88 5.01 -17.47 -0.09 0.80 16 7 N -0.86 -21.59 8.35 55.50 0.46 -21.12 16 8 Si 0.92 19.13 29.59 -169.99 -5.03 14.10 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 C 0.46 11.17 6.87 -10.99 -0.08 11.10 16 13 O -0.61 -16.25 15.60 5.55 0.09 -16.16 16 14 C -0.12 -2.49 1.88 -91.63 -0.17 -2.66 16 15 H 0.09 1.98 7.53 -51.93 -0.39 1.59 16 16 C -0.10 -1.76 4.71 -26.55 -0.12 -1.88 16 17 C -0.16 -2.20 6.14 -26.59 -0.16 -2.36 16 18 C 0.06 0.83 6.84 37.20 0.25 1.08 16 19 O -0.38 -6.72 10.77 -35.23 -0.38 -7.10 16 20 C 0.07 1.29 5.78 37.21 0.22 1.50 16 21 H 0.09 2.22 6.35 -51.93 -0.33 1.89 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.03 0.81 7.68 -51.93 -0.40 0.41 16 25 H 0.09 2.29 6.08 -51.93 -0.32 1.98 16 26 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.11 2.25 5.73 -51.93 -0.30 1.96 16 LS Contribution 268.06 15.07 4.04 4.04 Total: -1.00 -27.81 268.06 -5.98 -33.79 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.91 Total: 4.22 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.05 Total: -0.44 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.16 Total: -32.45 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.29 Total: -23.26 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.81 -5.98 -33.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062235341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.620 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds