Wall clock time and date at job start Sun Mar 29 2020 21:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47242 * 2 1 4 4 C 1.37102 * 119.99903 * 263.15588 * 3 2 1 5 5 H 1.07998 * 119.99787 * 195.74356 * 4 3 2 6 6 C 1.38947 * 120.00211 * 15.75114 * 4 3 2 7 7 N 1.31409 * 119.99984 * 16.90413 * 6 4 3 8 8 Si 1.86801 * 120.00102 * 196.90249 * 6 4 3 9 9 H 1.48497 * 109.46838 * 89.99702 * 8 6 4 10 10 H 1.48492 * 109.47084 * 210.00083 * 8 6 4 11 11 H 1.48503 * 109.46854 * 329.99915 * 8 6 4 12 12 C 1.34781 * 119.99973 * 83.15937 * 3 2 1 13 13 O 1.21290 * 119.99924 * 356.81043 * 12 3 2 14 14 C 1.50694 * 119.99980 * 176.80918 * 12 3 2 15 15 H 1.09005 * 109.52614 * 50.98992 * 14 12 3 16 16 C 1.53174 * 109.52504 * 171.17888 * 14 12 3 17 17 C 1.53177 * 109.04119 * 176.88629 * 16 14 12 18 18 C 1.53089 * 109.16028 * 303.01746 * 17 16 14 19 19 O 1.42900 * 109.41430 * 57.61168 * 18 17 16 20 20 C 1.42901 * 114.09907 * 298.83595 * 19 18 17 21 21 H 1.09004 * 109.47296 * 51.53493 * 1 2 3 22 22 H 1.08991 * 109.47655 * 171.53752 * 1 2 3 23 23 H 1.09000 * 109.46848 * 291.54387 * 1 2 3 24 24 H 1.09000 * 109.47173 * 120.00474 * 2 1 3 25 25 H 1.08998 * 109.46628 * 240.00126 * 2 1 3 26 26 H 0.96994 * 120.00452 * 180.02562 * 7 6 4 27 27 H 1.09006 * 109.53811 * 296.75528 * 16 14 12 28 28 H 1.09003 * 109.54420 * 57.01559 * 16 14 12 29 29 H 1.08995 * 109.52361 * 183.11013 * 17 16 14 30 30 H 1.09003 * 109.57091 * 62.95254 * 17 16 14 31 31 H 1.08995 * 109.48620 * 297.62415 * 18 17 16 32 32 H 1.08999 * 109.48574 * 177.59427 * 18 17 16 33 33 H 1.09005 * 109.48304 * 301.18334 * 20 19 18 34 34 H 1.08994 * 109.49434 * 181.15150 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3803 1.9803 -1.1789 5 1 2.9697 2.8851 -1.1660 6 6 1.9886 1.4234 -2.3901 7 7 1.0171 0.5392 -2.4232 8 14 2.8431 1.9317 -3.9716 9 1 4.0016 1.0359 -4.2181 10 1 1.8887 1.8300 -5.1046 11 1 3.3184 3.3332 -3.8489 12 6 2.1119 2.0629 1.1589 13 8 1.7377 1.5534 2.1941 14 6 2.6816 3.4580 1.1686 15 1 2.1778 4.0624 0.4143 16 6 2.4754 4.0855 2.5506 17 6 3.1265 5.4719 2.5720 18 6 4.6080 5.3369 2.2104 19 8 4.7294 4.7184 0.9279 20 6 4.1803 3.4009 0.8611 21 1 -0.3634 0.6393 -0.8047 22 1 -0.3634 -1.0164 -0.1512 23 1 -0.3633 0.3774 0.9559 24 1 1.8933 -0.5139 0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 0.7439 0.1502 -3.2686 27 1 1.4084 4.1806 2.7523 28 1 2.9366 3.4543 3.3102 29 1 3.0327 5.9030 3.5687 30 1 2.6321 6.1187 1.8473 31 1 5.1105 4.7239 2.9586 32 1 5.0669 6.3251 2.1823 33 1 4.6771 2.7624 1.5918 34 1 4.3310 2.9943 -0.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062235341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:37 Heat of formation + Delta-G solvation = -98.104160 kcal Electronic energy + Delta-G solvation = -16848.738253 eV Core-core repulsion = 14167.081837 eV Total energy + Delta-G solvation = -2681.656417 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17112 -39.42016 -37.01998 -34.47711 -33.47386 -32.77374 -30.97219 -26.84628 -26.01148 -25.31123 -23.60798 -21.44726 -20.76403 -18.91827 -17.93324 -17.16474 -16.81965 -16.28335 -16.13517 -15.88615 -15.09681 -14.98317 -14.65175 -14.18836 -13.89841 -13.60377 -13.43296 -13.14164 -12.84110 -12.58741 -12.42073 -12.31321 -12.04966 -11.92873 -11.74149 -11.62431 -11.25009 -10.86770 -10.55675 -10.18829 -9.70840 -8.23698 -5.87874 1.43310 1.51305 1.60868 1.98691 2.31172 2.81549 3.11808 3.15297 3.83637 3.95364 4.02115 4.09640 4.24397 4.38813 4.53953 4.62356 4.73695 4.80722 4.81927 4.90961 4.94531 5.01785 5.06491 5.11530 5.20597 5.39746 5.41497 5.48251 5.81771 5.86765 6.23695 6.49934 7.13754 7.60214 8.00689 8.73699 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.010809 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.840139 B = 2589.916194 C = 3447.665070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.139 3.861 3 N -0.448 5.448 4 C -0.359 4.359 5 H 0.114 0.886 6 C -0.002 4.002 7 N -0.881 5.881 8 Si 0.984 3.016 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.261 1.261 12 C 0.445 3.555 13 O -0.639 6.639 14 C -0.117 4.117 15 H 0.087 0.913 16 C -0.097 4.097 17 C -0.146 4.146 18 C 0.050 3.950 19 O -0.392 6.392 20 C 0.080 3.920 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.012 0.988 24 H 0.028 0.972 25 H 0.084 0.916 26 H 0.270 0.730 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.046 0.954 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 6.977 2.980 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.016 3.984 3 N -0.165 5.165 4 C -0.486 4.486 5 H 0.132 0.868 6 C -0.205 4.205 7 N -0.519 5.519 8 Si 0.809 3.191 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.185 1.185 12 C 0.235 3.765 13 O -0.529 6.529 14 C -0.138 4.138 15 H 0.105 0.895 16 C -0.135 4.135 17 C -0.184 4.184 18 C -0.026 4.026 19 O -0.311 6.311 20 C 0.003 3.997 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.013 6.676 3.141 8.919 hybrid contribution -0.277 -0.424 -0.609 0.792 sum 4.736 6.251 2.532 8.241 Atomic orbital electron populations 1.21780 0.96123 1.01117 0.98969 1.21075 0.95048 0.83323 0.98939 1.44072 1.54914 1.11354 1.06133 1.20175 1.33547 1.11925 0.82905 0.86840 1.26065 0.95489 0.96862 1.02055 1.70240 1.24640 1.29376 1.27648 0.85043 0.77864 0.79196 0.77039 1.19964 1.21029 1.18530 1.20603 0.83925 0.88546 0.83433 1.90474 1.56830 1.71732 1.33821 1.21589 0.98311 0.93813 1.00106 0.89507 1.21349 1.00987 0.96598 0.94569 1.22193 0.96574 0.95856 1.03735 1.22865 0.95775 0.99237 0.84681 1.87912 1.79885 1.29643 1.33683 1.22462 0.90132 0.84204 1.02901 0.91356 0.92740 0.96867 0.95389 0.89812 0.91974 0.92618 0.92371 0.88229 0.90973 0.92681 0.86192 0.93618 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 9.46 71.98 0.68 -5.18 16 2 C 0.14 7.00 5.20 86.38 0.45 7.45 16 3 N -0.45 -22.83 2.64 -635.55 -1.68 -24.50 16 4 C -0.36 -17.71 8.45 84.04 0.71 -17.00 16 5 H 0.11 5.29 4.79 -2.91 -0.01 5.28 16 6 C 0.00 -0.09 5.01 84.93 0.43 0.33 16 7 N -0.88 -44.16 8.35 21.66 0.18 -43.98 16 8 Si 0.98 38.58 29.59 68.60 2.03 40.61 16 9 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 12 C 0.45 22.03 6.87 87.65 0.60 22.64 16 13 O -0.64 -34.79 15.60 -3.06 -0.05 -34.84 16 14 C -0.12 -4.71 1.88 -11.45 -0.02 -4.74 16 15 H 0.09 3.62 7.53 -2.38 -0.02 3.60 16 16 C -0.10 -3.36 4.71 30.71 0.14 -3.21 16 17 C -0.15 -3.70 6.14 30.68 0.19 -3.51 16 18 C 0.05 1.25 6.84 72.01 0.49 1.75 16 19 O -0.39 -12.88 10.77 -148.98 -1.60 -14.49 16 20 C 0.08 2.95 5.78 72.02 0.42 3.37 16 21 H 0.07 3.55 6.35 -2.38 -0.02 3.53 16 22 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.01 0.61 8.09 -2.39 -0.02 0.60 16 24 H 0.03 1.40 7.68 -2.39 -0.02 1.38 16 25 H 0.08 4.30 6.08 -2.39 -0.01 4.28 16 26 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 27 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.06 2.10 7.91 -2.39 -0.02 2.08 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.10 3.99 5.73 -2.39 -0.01 3.97 16 Total: -1.00 -58.91 268.06 4.05 -54.86 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.08 Total: 20.46 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.09 Total: 1.88 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -1.50 Total: -68.48 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -1.65 Total: -49.32 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -58.91 4.05 -54.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062235341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.243 kcal (2) G-P(sol) polarization free energy of solvation -58.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds