Wall clock time and date at job start Sun Mar 29 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46889 * 2 1 4 4 C 1.37090 * 119.99961 * 273.30920 * 3 2 1 5 5 H 1.08003 * 120.00018 * 180.14121 * 4 3 2 6 6 C 1.38954 * 120.00199 * 0.13443 * 4 3 2 7 7 N 1.31404 * 119.99555 * 28.07241 * 6 4 3 8 8 Si 1.86796 * 120.00215 * 208.07151 * 6 4 3 9 9 H 1.48496 * 109.47353 * 90.00068 * 8 6 4 10 10 H 1.48496 * 109.47138 * 210.00008 * 8 6 4 11 11 H 1.48506 * 109.47062 * 329.99983 * 8 6 4 12 12 C 1.34774 * 119.99969 * 93.30870 * 3 2 1 13 13 O 1.21291 * 120.00371 * 5.54753 * 12 3 2 14 14 C 1.50705 * 120.00176 * 185.54741 * 12 3 2 15 15 H 1.09001 * 110.75178 * 31.16637 * 14 12 3 16 16 C 1.54389 * 110.84478 * 267.69888 * 14 12 3 17 17 O 1.43239 * 107.58402 * 220.24702 * 16 14 12 18 18 C 1.43641 * 109.97508 * 358.28630 * 17 16 14 19 19 H 1.08994 * 110.31446 * 265.41855 * 18 17 16 20 20 C 1.53003 * 110.30844 * 143.34179 * 18 17 16 21 21 C 1.54949 * 105.13582 * 24.43097 * 18 17 16 22 22 H 1.09002 * 109.46905 * 172.72297 * 1 2 3 23 23 H 1.08998 * 109.47070 * 292.72140 * 1 2 3 24 24 H 1.09002 * 109.46926 * 52.72550 * 1 2 3 25 25 H 1.09002 * 109.47566 * 239.99874 * 2 1 3 26 26 H 1.09004 * 109.46947 * 119.99865 * 2 1 3 27 27 H 0.97005 * 119.99904 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.82973 * 339.75994 * 16 14 12 29 29 H 1.09000 * 109.82992 * 100.73728 * 16 14 12 30 30 H 1.08997 * 109.46902 * 61.45989 * 20 18 17 31 31 H 1.08999 * 109.46853 * 181.45988 * 20 18 17 32 32 H 1.09003 * 109.47350 * 301.45777 * 20 18 17 33 33 H 1.08996 * 111.12692 * 205.63374 * 21 18 17 34 34 H 1.09000 * 111.12843 * 81.47196 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1821 2.0503 -1.1853 5 1 2.5443 3.0678 -1.1854 6 6 1.8824 1.4194 -2.3865 7 7 0.9734 0.4711 -2.4216 8 14 2.7717 1.9192 -3.9513 9 1 3.9962 1.0943 -4.1099 10 1 1.8776 1.7073 -5.1179 11 1 3.1481 3.3535 -3.8702 12 6 2.3064 1.9941 1.1652 13 8 2.2583 1.3725 2.2056 14 6 2.6884 3.4519 1.1756 15 1 2.1910 3.9872 0.3668 16 6 4.2205 3.6191 1.0846 17 8 4.5933 4.6812 1.9705 18 6 3.4228 5.2355 2.5919 19 1 3.0723 6.1028 2.0326 20 6 3.7247 5.6251 4.0403 21 6 2.3668 4.1024 2.5487 22 1 -0.3633 -1.0194 -0.1302 23 1 -0.3633 0.3969 0.9479 24 1 -0.3633 0.6224 -0.8178 25 1 1.8935 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.7639 0.0309 -3.2602 28 1 4.7120 2.6947 1.3881 29 1 4.5048 3.8725 0.0633 30 1 4.5044 6.3866 4.0568 31 1 2.8216 6.0196 4.5061 32 1 4.0630 4.7467 4.5900 33 1 1.3550 4.5076 2.5641 34 1 2.5168 3.3943 3.3637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162081843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:53 Heat of formation + Delta-G solvation = -92.114131 kcal Electronic energy + Delta-G solvation = -16636.410129 eV Core-core repulsion = 13955.013459 eV Total energy + Delta-G solvation = -2681.396670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22798 -39.55546 -37.00970 -33.53419 -33.38211 -32.85392 -31.20582 -27.00861 -26.79456 -24.97519 -22.66832 -22.10375 -20.86657 -18.63256 -18.36655 -17.48606 -16.61159 -16.24051 -16.04570 -15.65428 -15.19917 -14.79921 -14.43838 -14.21032 -13.85001 -13.38774 -13.28630 -13.13101 -12.88183 -12.79847 -12.54087 -12.29539 -12.15346 -12.03476 -11.83238 -11.75512 -11.55127 -10.83476 -10.55054 -10.27674 -9.83616 -8.32521 -5.80830 1.40234 1.51003 1.59815 1.93434 2.27909 2.75403 2.98238 3.05415 3.62856 3.91841 4.04165 4.15174 4.27008 4.36130 4.47833 4.63324 4.71475 4.76648 4.82007 4.85761 4.90431 4.98706 5.06303 5.11167 5.24116 5.34403 5.37740 5.44973 5.75838 5.85515 6.03879 6.46354 7.11172 7.57971 7.98883 8.65166 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029886 B = 0.009187 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.660852 B = 3047.075109 C = 3748.698358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.131 3.869 3 N -0.444 5.444 4 C -0.366 4.366 5 H 0.113 0.887 6 C 0.005 3.995 7 N -0.866 5.866 8 Si 0.979 3.021 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.259 1.259 12 C 0.445 3.555 13 O -0.644 6.644 14 C -0.124 4.124 15 H 0.105 0.895 16 C 0.080 3.920 17 O -0.396 6.396 18 C 0.073 3.927 19 H 0.089 0.911 20 C -0.145 4.145 21 C -0.130 4.130 22 H 0.055 0.945 23 H 0.012 0.988 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.272 0.728 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 7.556 2.486 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 N -0.160 5.160 4 C -0.493 4.493 5 H 0.131 0.869 6 C -0.199 4.199 7 N -0.503 5.503 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.183 1.183 12 C 0.235 3.765 13 O -0.534 6.534 14 C -0.145 4.145 15 H 0.123 0.877 16 C 0.002 3.998 17 O -0.316 6.316 18 C 0.017 3.983 19 H 0.107 0.893 20 C -0.202 4.202 21 C -0.168 4.168 22 H 0.074 0.926 23 H 0.031 0.969 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.161 7.164 2.836 8.003 hybrid contribution -0.093 -0.455 -0.947 1.054 sum 2.068 6.710 1.890 7.271 Atomic orbital electron populations 1.21817 0.95480 1.01326 0.99253 1.21217 0.95385 0.83362 0.99252 1.44127 1.54339 1.11909 1.05668 1.20004 1.45923 1.00620 0.82725 0.86935 1.25966 0.95241 0.96773 1.01920 1.70340 1.25487 1.26066 1.28391 0.85143 0.78127 0.79341 0.77084 1.20530 1.20909 1.18259 1.20191 0.83818 0.89637 0.82892 1.90474 1.61896 1.67858 1.33182 1.22567 0.97662 0.93794 1.00518 0.87697 1.22796 0.92443 0.90052 0.94461 1.88329 1.32079 1.50533 1.60633 1.23193 0.84093 0.95387 0.95664 0.89277 1.21880 1.03404 1.01906 0.93003 1.23218 1.00748 0.97262 0.95581 0.92648 0.96891 0.90666 0.90143 0.94895 0.91742 0.93230 0.89729 0.90920 0.89079 0.93118 0.88751 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 9.46 71.98 0.68 -4.93 16 2 C 0.13 6.53 5.46 86.38 0.47 7.01 16 3 N -0.44 -22.44 2.63 -635.53 -1.67 -24.11 16 4 C -0.37 -17.79 9.16 84.04 0.77 -17.02 16 5 H 0.11 5.10 6.08 -2.91 -0.02 5.08 16 6 C 0.01 0.25 4.96 84.93 0.42 0.67 16 7 N -0.87 -42.16 8.20 21.66 0.18 -41.98 16 8 Si 0.98 37.58 29.64 68.60 2.03 39.61 16 9 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 10 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 12 C 0.44 21.82 6.67 87.66 0.58 22.40 16 13 O -0.64 -35.12 15.35 -3.06 -0.05 -35.16 16 14 C -0.12 -4.90 2.43 -10.27 -0.02 -4.93 16 15 H 0.10 4.00 6.58 -2.39 -0.02 3.98 16 16 C 0.08 2.97 7.39 72.45 0.54 3.50 16 17 O -0.40 -13.72 11.04 -148.98 -1.64 -15.36 16 18 C 0.07 2.10 4.08 31.26 0.13 2.23 16 19 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 20 C -0.14 -3.32 9.62 71.98 0.69 -2.63 16 21 C -0.13 -4.40 5.91 32.05 0.19 -4.21 16 22 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 23 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.07 3.75 6.25 -2.39 -0.01 3.74 16 25 H 0.08 4.11 6.04 -2.39 -0.01 4.10 16 26 H 0.03 1.67 7.26 -2.38 -0.02 1.65 16 27 H 0.27 12.51 8.31 -92.70 -0.77 11.74 16 28 H 0.05 2.02 7.81 -2.39 -0.02 2.00 16 29 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.07 2.70 7.14 -2.39 -0.02 2.69 16 Total: -1.00 -58.24 273.90 4.38 -53.86 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 1.08 Total: 21.05 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.45 Total: 2.09 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -1.49 Total: -66.09 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -1.69 Total: -50.53 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -58.24 4.38 -53.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162081843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.249 kcal (2) G-P(sol) polarization free energy of solvation -58.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds