Wall clock time and date at job start Sun Mar 29 2020 21:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00123 * 2 1 4 4 C 1.52994 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47036 * 185.07842 * 4 3 2 6 6 C 1.52999 * 115.55291 * 294.63140 * 5 4 3 7 7 N 1.46504 * 109.47103 * 279.24849 * 6 5 4 8 8 C 1.34777 * 120.00075 * 178.58416 * 7 6 5 9 9 O 1.21688 * 119.99965 * 0.27459 * 8 7 6 10 10 C 1.46374 * 120.00226 * 180.27351 * 8 7 6 11 11 H 1.08004 * 119.99632 * 359.97438 * 10 8 7 12 12 C 1.40043 * 120.00317 * 179.97438 * 10 8 7 13 13 N 1.30679 * 119.99810 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00398 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47197 * 89.99928 * 14 12 10 16 16 H 1.48505 * 109.47337 * 210.00278 * 14 12 10 17 17 H 1.48497 * 109.46830 * 329.99925 * 14 12 10 18 18 C 1.52998 * 117.52004 * 80.33639 * 5 4 3 19 19 C 1.53004 * 60.00226 * 107.47786 * 18 5 4 20 20 H 1.08999 * 109.47178 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47384 * 300.00030 * 1 2 3 22 22 H 1.08994 * 109.47203 * 59.99868 * 1 2 3 23 23 H 1.09006 * 109.47132 * 59.99566 * 3 2 1 24 24 H 1.09006 * 109.46652 * 300.00322 * 3 2 1 25 25 H 1.09004 * 109.47025 * 65.08173 * 4 3 2 26 26 H 1.08993 * 109.47402 * 305.07852 * 4 3 2 27 27 H 1.08991 * 109.47388 * 159.24605 * 6 5 4 28 28 H 1.09004 * 109.47164 * 39.24277 * 6 5 4 29 29 H 0.97001 * 119.99825 * 358.85336 * 7 6 5 30 30 H 0.97001 * 120.00059 * 179.97438 * 13 12 10 31 31 H 1.09000 * 117.50158 * 214.97076 * 18 5 4 32 32 H 1.09002 * 117.49581 * 359.97438 * 18 5 4 33 33 H 1.09000 * 117.49891 * 252.50957 * 19 18 5 34 34 H 1.09000 * 117.49479 * 107.49361 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1572 2.5768 0.1283 6 6 3.9090 3.5210 -1.0497 7 7 4.8490 3.2116 -2.1299 8 6 4.7971 3.9014 -3.2866 9 8 3.9727 4.7846 -3.4319 10 6 5.7324 3.5883 -4.3682 11 1 6.4644 2.8047 -4.2391 12 6 5.6781 4.3047 -5.5703 13 7 4.7928 5.2531 -5.7263 14 14 6.8712 3.9046 -6.9508 15 1 6.2790 2.8659 -7.8314 16 1 7.1402 5.1311 -7.7436 17 1 8.1430 3.3988 -6.3747 18 6 4.2264 3.1945 1.5263 19 6 5.5016 2.6864 0.8505 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8463 -0.8900 25 1 3.8638 0.7241 -0.9312 26 1 3.8506 0.5674 0.8418 27 1 4.0539 4.5516 -0.7261 28 1 2.8879 3.3931 -1.4090 29 1 5.5063 2.5076 -2.0141 30 1 4.7554 5.7496 -6.5587 31 1 4.0952 4.2736 1.6068 32 1 3.8286 2.6093 2.3554 33 1 5.9429 1.7669 1.2350 34 1 6.2092 3.4313 0.4864 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229007935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:56 Heat of formation + Delta-G solvation = -73.913797 kcal Electronic energy + Delta-G solvation = -15685.795937 eV Core-core repulsion = 13005.188493 eV Total energy + Delta-G solvation = -2680.607444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.90097 -37.50507 -36.59723 -32.79663 -31.97323 -30.88380 -27.27228 -26.43289 -24.90937 -23.31932 -22.11523 -19.69196 -18.76370 -17.12302 -16.39478 -15.98412 -15.36407 -15.24601 -14.71044 -14.36970 -13.95475 -13.73700 -13.11530 -12.91674 -12.21872 -12.09348 -11.50427 -11.43699 -11.36715 -11.24491 -11.13171 -10.93932 -10.67176 -10.41218 -10.22201 -9.97498 -9.65721 -9.58645 -8.82170 -7.57456 -7.43440 -6.15376 -4.60494 3.16263 3.22866 3.26368 3.63026 3.96062 4.15634 4.62181 4.84674 4.90368 4.95761 5.12034 5.23067 5.30158 5.34524 5.47320 5.55504 5.59755 5.67534 5.75468 5.82562 5.94857 6.05064 6.23668 6.25456 6.30218 6.55804 6.59281 7.18481 7.46546 7.98532 8.15287 8.37602 9.05862 9.59493 10.63702 10.82595 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028857 B = 0.006014 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.081964 B = 4654.502975 C = 5087.854060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.062 3.938 4 C -0.075 4.075 5 C -0.134 4.134 6 C 0.169 3.831 7 N -0.763 5.763 8 C 0.554 3.446 9 O -0.583 6.583 10 C -0.545 4.545 11 H 0.067 0.933 12 C 0.088 3.912 13 N -0.770 5.770 14 Si 0.907 3.093 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.172 4.172 19 C -0.164 4.164 20 H 0.082 0.918 21 H 0.038 0.962 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.381 0.619 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -7.771 11.722 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C -0.014 4.014 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.044 3.956 7 N -0.419 5.419 8 C 0.358 3.642 9 O -0.467 6.467 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.132 4.132 13 N -0.398 5.398 14 Si 0.732 3.268 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.209 4.209 19 C -0.201 4.201 20 H 0.101 0.899 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.212 0.788 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.291 -7.117 11.493 13.913 hybrid contribution 0.637 -0.274 -0.598 0.915 sum -2.654 -7.391 10.896 13.431 Atomic orbital electron populations 1.22706 0.81304 1.02389 1.00020 1.87830 1.19527 1.28630 1.95477 1.22557 0.94126 0.84106 1.00603 1.20931 0.92703 0.94372 1.03248 1.21679 1.01265 0.96615 0.93865 1.20373 0.94268 0.95330 0.85608 1.46093 1.38021 1.41927 1.15842 1.18220 0.84584 0.80879 0.80500 1.90593 1.40906 1.33990 1.81174 1.20893 1.18294 1.20616 0.98436 0.91459 1.25704 0.94976 0.93599 0.98897 1.70031 1.29256 1.16211 1.24352 0.86386 0.81114 0.78415 0.80914 1.19762 1.20492 1.18919 1.23032 1.02166 1.00953 0.94758 1.22976 0.90790 1.03118 1.03264 0.89902 0.94322 0.93940 0.93396 0.92603 0.90313 0.91362 0.93399 0.92990 0.78768 0.92180 0.88663 0.88959 0.88896 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.40 -5.59 10.70 -35.23 -0.38 -5.97 16 3 C 0.06 0.86 5.70 37.15 0.21 1.07 16 4 C -0.08 -1.04 5.47 -26.73 -0.15 -1.19 16 5 C -0.13 -1.95 1.52 -154.51 -0.24 -2.18 16 6 C 0.17 3.29 5.54 -4.04 -0.02 3.27 16 7 N -0.76 -17.29 5.51 -61.72 -0.34 -17.63 16 8 C 0.55 16.02 7.75 -12.99 -0.10 15.92 16 9 O -0.58 -19.21 15.02 5.20 0.08 -19.13 16 10 C -0.55 -15.63 9.54 -35.63 -0.34 -15.97 16 11 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 12 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 13 N -0.77 -23.41 11.83 55.55 0.66 -22.75 16 14 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 18 C -0.17 -2.10 9.90 -26.73 -0.26 -2.36 16 19 C -0.16 -2.12 9.85 -26.73 -0.26 -2.39 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.85 6.96 -51.93 -0.36 0.49 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 28 H 0.05 1.08 6.72 -51.93 -0.35 0.73 16 29 H 0.38 7.71 8.41 -40.82 -0.34 7.36 16 30 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 31 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -34.32 293.19 -5.97 -40.29 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.23 Total: 5.41 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.14 Total: 0.03 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.32 Total: -40.39 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.30 Total: -25.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.32 -5.97 -40.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229007935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.626 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds