Wall clock time and date at job start Sun Mar 29 2020 21:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42890 * 114.00261 * 2 1 4 4 C 1.53010 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.49866 * 54.99952 * 4 3 2 6 6 C 1.53038 * 109.52046 * 175.08307 * 4 3 2 7 7 C 1.53042 * 109.53385 * 181.33387 * 6 4 3 8 8 C 1.53194 * 109.31154 * 298.63274 * 7 6 4 9 9 N 1.46922 * 108.77462 * 54.63626 * 8 7 6 10 10 C 1.34781 * 120.63084 * 126.37334 * 9 8 7 11 11 O 1.21693 * 120.00049 * 174.76694 * 10 9 8 12 12 C 1.46369 * 119.99873 * 354.76355 * 10 9 8 13 13 H 1.08001 * 119.99950 * 345.14103 * 12 10 9 14 14 C 1.40050 * 120.00266 * 165.14429 * 12 10 9 15 15 N 1.30669 * 120.00296 * 171.28145 * 14 12 10 16 16 Si 1.86806 * 119.99476 * 351.27849 * 14 12 10 17 17 H 1.48503 * 109.46952 * 84.73855 * 16 14 12 18 18 H 1.48502 * 109.46731 * 204.73879 * 16 14 12 19 19 H 1.48497 * 109.47148 * 324.73404 * 16 14 12 20 20 C 1.46924 * 118.74044 * 306.38941 * 9 8 7 21 21 H 1.09004 * 109.47385 * 59.99341 * 1 2 3 22 22 H 1.09007 * 109.47775 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47063 * 299.99828 * 1 2 3 24 24 H 1.09000 * 109.47455 * 60.00330 * 3 2 1 25 25 H 1.09000 * 109.47424 * 299.99742 * 3 2 1 26 26 H 1.09001 * 109.46207 * 301.34548 * 6 4 3 27 27 H 1.09000 * 109.46599 * 61.31529 * 6 4 3 28 28 H 1.08996 * 109.49947 * 178.68679 * 7 6 4 29 29 H 1.08998 * 109.50132 * 58.58342 * 7 6 4 30 30 H 1.09000 * 109.58885 * 294.84866 * 8 7 6 31 31 H 1.09003 * 109.59005 * 174.42406 * 8 7 6 32 32 H 0.96998 * 119.99615 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.59019 * 293.82351 * 20 9 8 34 34 H 1.09000 * 109.70293 * 173.46640 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 1 3.8513 0.5683 -0.8426 6 6 4.1588 2.5767 -0.1243 7 6 5.6839 2.4534 -0.1584 8 6 6.1704 1.8202 1.1490 9 7 5.4663 0.5461 1.3480 10 6 6.1546 -0.5927 1.5623 11 8 5.5609 -1.6232 1.8202 12 6 7.6162 -0.5899 1.4849 13 1 8.1313 0.2426 1.0287 14 6 8.3470 -1.6669 2.0022 15 7 9.6328 -1.7488 1.7844 16 14 7.4833 -2.9862 3.0037 17 1 6.8992 -3.9994 2.0886 18 1 8.4624 -3.6416 3.9077 19 1 6.4021 -2.3664 3.8111 20 6 3.9976 0.5369 1.3085 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3635 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6887 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8122 3.0495 -1.0432 27 1 3.8627 3.1844 0.7307 28 1 6.1265 3.4432 -0.2699 29 1 5.9794 1.8253 -0.9988 30 1 5.9557 2.4902 1.9815 31 1 7.2436 1.6392 1.0902 32 1 10.1388 -2.4945 2.1430 33 1 3.6057 1.1022 2.1541 34 1 3.6351 -0.4900 1.3561 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231142134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:57 Heat of formation + Delta-G solvation = -101.337993 kcal Electronic energy + Delta-G solvation = -16334.185849 eV Core-core repulsion = 13652.389202 eV Total energy + Delta-G solvation = -2681.796646 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.11219 -37.66331 -36.10188 -32.79773 -32.47085 -31.00715 -27.49082 -26.60222 -24.92338 -24.24554 -21.65863 -20.30364 -18.84714 -16.69506 -16.27568 -15.97572 -15.85285 -15.06684 -14.65456 -14.23915 -13.82916 -13.64563 -13.10773 -12.76006 -12.40380 -12.34082 -11.98468 -11.77900 -11.57872 -11.23230 -10.88968 -10.67490 -10.60119 -10.43074 -10.16782 -10.05688 -9.61007 -9.33334 -8.96930 -7.83373 -7.45612 -6.57053 -4.77799 3.50501 3.53909 3.77847 3.81284 4.26200 4.28043 4.62121 4.99838 5.05076 5.17679 5.27010 5.28387 5.36938 5.42851 5.55008 5.61524 5.69856 5.82956 5.85758 5.94335 6.04791 6.17234 6.33873 6.47355 6.54489 6.58677 6.74671 7.17378 7.23705 7.72054 7.94748 8.36956 8.78206 9.21541 10.11627 10.43982 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.008252 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.879630 B = 3392.296076 C = 4139.259251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.071 3.929 4 C -0.103 4.103 5 H 0.081 0.919 6 C -0.107 4.107 7 C -0.134 4.134 8 C 0.118 3.882 9 N -0.632 5.632 10 C 0.555 3.445 11 O -0.615 6.615 12 C -0.534 4.534 13 H 0.091 0.909 14 C 0.102 3.898 15 N -0.831 5.831 16 Si 0.965 3.035 17 H -0.278 1.278 18 H -0.322 1.322 19 H -0.266 1.266 20 C 0.129 3.871 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.281 0.719 33 H 0.043 0.957 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 9.321 -3.329 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.007 4.007 4 C -0.123 4.123 5 H 0.099 0.901 6 C -0.145 4.145 7 C -0.173 4.173 8 C -0.006 4.006 9 N -0.366 5.366 10 C 0.364 3.636 11 O -0.507 6.507 12 C -0.569 4.569 13 H 0.109 0.891 14 C -0.116 4.116 15 N -0.461 5.461 16 Si 0.798 3.202 17 H -0.204 1.204 18 H -0.254 1.254 19 H -0.191 1.191 20 C 0.005 3.995 21 H 0.055 0.945 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.262 8.591 -3.207 15.311 hybrid contribution -0.523 -0.124 0.261 0.597 sum -12.784 8.467 -2.946 15.614 Atomic orbital electron populations 1.22710 0.81630 1.02607 0.99510 1.87980 1.19122 1.27972 1.95275 1.22561 0.93917 0.84537 0.99640 1.21576 0.92059 0.97649 1.00989 0.90100 1.21455 0.96209 0.95583 1.01239 1.21930 0.94889 1.00669 0.99765 1.21516 0.99162 0.85212 0.94723 1.47711 1.04314 1.08064 1.76500 1.18345 0.88726 0.80871 0.75688 1.90205 1.70970 1.32045 1.57453 1.20776 0.88371 1.07079 1.40720 0.89141 1.25746 0.94486 0.97839 0.93479 1.69560 1.08048 1.30465 1.38005 0.85252 0.76500 0.79426 0.79034 1.20394 1.25360 1.19099 1.21188 0.82332 1.02103 0.93842 0.94468 0.89769 0.94297 0.93427 0.93572 0.92388 0.92082 0.91499 0.91499 0.93567 0.88300 0.90885 0.93871 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.87 10.35 -35.23 -0.36 -6.23 16 3 C 0.07 0.94 5.32 37.16 0.20 1.13 16 4 C -0.10 -1.62 2.58 -90.50 -0.23 -1.86 16 5 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 6 C -0.11 -1.41 5.17 -26.69 -0.14 -1.55 16 7 C -0.13 -1.98 6.08 -26.61 -0.16 -2.14 16 8 C 0.12 2.17 6.35 -3.71 -0.02 2.14 16 9 N -0.63 -14.20 2.97 -174.43 -0.52 -14.72 16 10 C 0.55 15.31 7.28 -12.99 -0.09 15.22 16 11 O -0.61 -18.59 11.88 5.19 0.06 -18.52 16 12 C -0.53 -15.31 9.27 -35.63 -0.33 -15.64 16 13 H 0.09 2.55 6.11 -52.49 -0.32 2.23 16 14 C 0.10 2.97 5.52 -17.37 -0.10 2.87 16 15 N -0.83 -23.94 13.92 55.55 0.77 -23.17 16 16 Si 0.97 26.19 25.85 -169.99 -4.39 21.79 16 17 H -0.28 -7.77 7.11 56.52 0.40 -7.37 16 18 H -0.32 -8.22 7.11 56.52 0.40 -7.82 16 19 H -0.27 -7.56 6.68 56.52 0.38 -7.18 16 20 C 0.13 2.54 5.53 -3.71 -0.02 2.51 16 21 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.98 5.38 -51.93 -0.28 1.70 16 32 H 0.28 7.47 8.29 -40.82 -0.34 7.13 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 2.07 6.88 -51.93 -0.36 1.71 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -33.08 274.35 -5.28 -38.36 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -5.19 Total: -5.78 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.21 Total: 4.14 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.25 Total: -37.89 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.30 Total: -24.76 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -4.39 Total: 21.79 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.08 -5.28 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231142134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.976 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds