Wall clock time and date at job start Sun Mar 29 2020 21:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37095 * 119.99895 * 2 1 4 4 H 1.08004 * 119.99714 * 202.40957 * 3 2 1 5 5 C 1.38947 * 120.00008 * 22.41289 * 3 2 1 6 6 N 1.31409 * 120.00444 * 11.59184 * 5 3 2 7 7 Si 1.86806 * 119.99809 * 191.59111 * 5 3 2 8 8 H 1.48507 * 109.46931 * 59.99903 * 7 5 3 9 9 H 1.48499 * 109.46935 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47267 * 300.00126 * 7 5 3 11 11 C 1.34780 * 119.99842 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99621 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00024 * 359.97438 * 11 2 1 14 14 C 1.53000 * 109.47388 * 180.02562 * 13 11 2 15 15 C 1.53178 * 109.54616 * 65.43893 * 14 13 11 16 16 C 1.53095 * 109.16488 * 176.85315 * 15 14 13 17 17 O 1.42905 * 109.41172 * 302.39264 * 16 15 14 18 18 C 1.42907 * 114.09975 * 61.16072 * 17 16 15 19 19 C 1.53102 * 109.41176 * 298.84045 * 18 17 16 20 20 H 1.08995 * 109.47300 * 272.15780 * 1 2 3 21 21 H 1.09002 * 109.47264 * 32.15977 * 1 2 3 22 22 H 1.08999 * 109.47480 * 152.15800 * 1 2 3 23 23 H 0.97000 * 120.00204 * 180.02562 * 6 5 3 24 24 H 1.08993 * 109.47481 * 59.99813 * 13 11 2 25 25 H 1.09005 * 109.47383 * 300.00342 * 13 11 2 26 26 H 1.09011 * 109.61162 * 305.22256 * 14 13 11 27 27 H 1.09000 * 109.52359 * 296.76077 * 15 14 13 28 28 H 1.08994 * 109.51784 * 56.94613 * 15 14 13 29 29 H 1.09001 * 109.47805 * 182.41202 * 16 15 14 30 30 H 1.08999 * 109.47977 * 62.37578 * 16 15 14 31 31 H 1.08998 * 109.48395 * 178.85921 * 18 17 16 32 32 H 1.08994 * 109.48899 * 58.82595 * 18 17 16 33 33 H 1.08997 * 109.51796 * 297.70419 * 19 18 17 34 34 H 1.08993 * 109.52178 * 177.51414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2226 -0.3566 5 6 1.5344 2.3451 0.4588 6 7 0.3896 2.2707 1.0997 7 14 2.3336 4.0078 0.1646 8 1 2.4815 4.2344 -1.2957 9 1 1.4825 5.0761 0.7472 10 1 3.6719 4.0345 0.8076 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 6 3.1686 -3.6349 1.3124 16 6 4.1041 -4.8465 1.3368 17 8 3.3367 -6.0424 1.1845 18 6 2.6148 -6.1197 -0.0464 19 6 1.6194 -4.9591 -0.1264 20 1 -0.3633 0.0387 1.0269 21 1 -0.3634 0.8700 -0.5470 22 1 -0.3634 -0.9087 -0.4799 23 1 -0.0406 3.0791 1.4196 24 1 0.7583 -2.5299 -0.8902 25 1 0.7589 -2.5302 0.8897 26 1 3.0674 -3.5286 -0.8394 27 1 3.7561 -2.7196 1.3841 28 1 2.4770 -3.6917 2.1529 29 1 4.6371 -4.8752 2.2872 30 1 4.8214 -4.7684 0.5198 31 1 2.0749 -7.0654 -0.0925 32 1 3.3125 -6.0584 -0.8816 33 1 0.8967 -5.0427 0.6852 34 1 1.0991 -4.9909 -1.0835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259777627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:27 Heat of formation + Delta-G solvation = -89.845920 kcal Electronic energy + Delta-G solvation = -16293.749875 eV Core-core repulsion = 13612.451562 eV Total energy + Delta-G solvation = -2681.298313 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42101 -38.12512 -34.94478 -33.88268 -31.60911 -30.81966 -28.57786 -26.17990 -24.53065 -23.30754 -22.76631 -19.84842 -18.62041 -16.84377 -16.13323 -15.80093 -15.59182 -14.99652 -14.56649 -14.38282 -14.12345 -13.60418 -13.22662 -12.38964 -12.17915 -12.07675 -11.68133 -11.39272 -11.23224 -11.17481 -11.00271 -10.86256 -10.54095 -10.39066 -10.26117 -10.13517 -9.96414 -9.30877 -8.99378 -8.25358 -7.65057 -6.28834 -3.85535 3.19513 3.24820 3.28839 3.93650 4.05783 4.15460 4.76863 5.04295 5.12441 5.17299 5.21521 5.30240 5.45045 5.62386 5.72713 5.81578 5.91667 5.95082 6.06463 6.12117 6.17187 6.27115 6.41694 6.48113 6.76334 6.78435 6.90944 7.24391 7.38742 7.58083 8.16143 8.51777 9.22063 9.46811 10.03075 10.74803 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.055402 B = 0.006180 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.276108 B = 4529.566100 C = 4800.294747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.447 3.553 12 O -0.590 6.590 13 C -0.124 4.124 14 C -0.068 4.068 15 C -0.153 4.153 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.063 3.937 19 C -0.153 4.153 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.026 0.974 23 H 0.267 0.733 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -10.827 -1.859 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.235 3.765 12 O -0.475 6.475 13 C -0.165 4.165 14 C -0.087 4.087 15 C -0.191 4.191 16 C -0.014 4.014 17 O -0.310 6.310 18 C -0.014 4.014 19 C -0.190 4.190 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.275 -10.796 -1.631 10.922 hybrid contribution -0.019 1.236 -0.263 1.263 sum -0.294 -9.561 -1.893 9.751 Atomic orbital electron populations 1.21487 0.81257 0.98683 1.01635 1.43621 1.05488 1.04907 1.62807 1.19608 0.99417 0.84004 1.40380 0.88506 1.25332 0.96529 1.00036 0.95460 1.69990 1.17421 1.29295 1.35807 0.85997 0.79006 0.80970 0.78699 1.19985 1.20969 1.19831 1.20080 0.88099 0.84868 0.83448 1.90454 1.14026 1.87119 1.55937 1.21578 0.98510 0.93863 1.02515 1.20851 0.96608 0.92369 0.98838 1.22332 0.99608 0.99880 0.97238 1.22616 0.93055 0.84312 1.01410 1.87865 1.63788 1.40519 1.38799 1.22516 0.93748 0.98375 0.86734 1.22289 0.98848 0.95481 1.02415 0.92483 0.91429 0.95559 0.92275 0.90693 0.90479 0.90696 0.88181 0.92091 0.89320 0.93355 0.89434 0.93480 0.91207 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.55 8.52 59.85 0.51 3.06 16 2 N -0.45 -11.62 3.02 -122.20 -0.37 -11.98 16 3 C -0.31 -8.62 9.29 -14.94 -0.14 -8.76 16 4 H 0.10 2.84 7.41 -52.48 -0.39 2.45 16 5 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 6 N -0.89 -23.84 10.62 55.50 0.59 -23.25 16 7 Si 0.93 20.95 29.57 -169.99 -5.03 15.92 16 8 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.45 10.76 7.37 -10.99 -0.08 10.68 16 12 O -0.59 -15.84 13.70 5.55 0.08 -15.76 16 13 C -0.12 -2.27 3.70 -27.89 -0.10 -2.37 16 14 C -0.07 -1.11 1.91 -90.44 -0.17 -1.29 16 15 C -0.15 -2.59 5.13 -26.59 -0.14 -2.73 16 16 C 0.06 0.92 6.84 37.21 0.25 1.17 16 17 O -0.39 -5.79 10.77 -35.23 -0.38 -6.17 16 18 C 0.06 0.78 6.84 37.21 0.25 1.04 16 19 C -0.15 -1.99 5.42 -26.59 -0.14 -2.13 16 20 H 0.06 1.34 7.54 -51.93 -0.39 0.94 16 21 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 22 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 23 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.07 1.23 7.40 -51.93 -0.38 0.84 16 25 H 0.08 1.35 8.11 -51.93 -0.42 0.92 16 26 H 0.07 1.33 7.95 -51.92 -0.41 0.91 16 27 H 0.10 2.01 6.07 -51.93 -0.32 1.69 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 272.33 15.07 4.10 4.10 Total: -1.00 -30.49 272.33 -5.96 -36.45 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.10 Total: 1.33 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.15 Total: -0.63 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.22 Total: -35.24 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.30 Total: -21.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.49 -5.96 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.395 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds