Wall clock time and date at job start Sun Mar 29 2020 21:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99607 * 2 1 4 4 C 1.52994 * 112.85301 * 294.86864 * 3 2 1 5 5 C 1.53001 * 109.47229 * 289.29967 * 4 3 2 6 6 N 1.46505 * 109.46991 * 174.92929 * 5 4 3 7 7 C 1.34774 * 119.99673 * 179.97438 * 6 5 4 8 8 O 1.21686 * 120.00243 * 0.02562 * 7 6 5 9 9 C 1.46375 * 119.99879 * 180.02562 * 7 6 5 10 10 H 1.08004 * 120.00105 * 0.02562 * 9 7 6 11 11 C 1.40047 * 120.00121 * 180.02562 * 9 7 6 12 12 N 1.30674 * 119.99885 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00133 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47052 * 59.99724 * 13 11 9 15 15 H 1.48497 * 109.47134 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47004 * 299.99753 * 13 11 9 17 17 C 1.53779 * 113.69087 * 66.14136 * 3 2 1 18 18 C 1.53783 * 87.08198 * 89.11988 * 17 3 2 19 19 C 1.53779 * 87.08180 * 25.43569 * 18 17 3 20 20 H 1.09002 * 109.46778 * 296.24629 * 1 2 3 21 21 H 1.08992 * 109.47024 * 56.24730 * 1 2 3 22 22 H 1.08996 * 109.46734 * 176.24725 * 1 2 3 23 23 H 1.09003 * 109.47181 * 169.29602 * 4 3 2 24 24 H 1.09000 * 109.47014 * 49.30274 * 4 3 2 25 25 H 1.08995 * 109.47016 * 54.92783 * 5 4 3 26 26 H 1.08999 * 109.46802 * 294.92875 * 5 4 3 27 27 H 0.96998 * 120.00244 * 359.97438 * 6 5 4 28 28 H 0.96997 * 119.99463 * 180.02562 * 12 11 9 29 29 H 1.08999 * 113.61551 * 203.67165 * 17 3 2 30 30 H 1.09007 * 113.61414 * 334.57784 * 17 3 2 31 31 H 1.08993 * 113.61997 * 270.88419 * 18 17 3 32 32 H 1.09008 * 113.68951 * 139.99322 * 18 17 3 33 33 H 1.09000 * 113.61466 * 220.01779 * 19 18 17 34 34 H 1.08999 * 113.61659 * 89.10771 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7102 2.0895 -1.2791 5 6 2.4888 1.4788 -2.4461 6 7 2.1098 2.1513 -3.6912 7 6 2.6726 1.7775 -4.8573 8 8 3.4952 0.8810 -4.8761 9 6 2.2944 2.4498 -6.1013 10 1 1.5645 3.2457 -6.0846 11 6 2.8788 2.0609 -7.3131 12 7 3.7622 1.0982 -7.3332 13 14 2.3966 2.9194 -8.9006 14 1 2.7142 4.3663 -8.7970 15 1 3.1526 2.3270 -10.0331 16 1 0.9400 2.7478 -9.1334 17 6 1.7411 2.1016 1.2879 18 6 3.0256 1.4718 1.8521 19 6 3.4962 1.3183 0.3962 20 1 -0.3633 0.4545 0.9217 21 1 -0.3633 0.5709 -0.8544 22 1 -0.3633 -1.0254 -0.0673 23 1 2.0098 3.1291 -1.1468 24 1 0.6421 2.0435 -1.4913 25 1 2.2565 0.4166 -2.5215 26 1 3.5579 1.6056 -2.2754 27 1 1.4538 2.8657 -3.6763 28 1 4.1672 0.8292 -8.1725 29 1 1.8062 3.1816 1.1552 30 1 0.8366 1.7921 1.8116 31 1 2.8595 0.5217 2.3598 32 1 3.6325 2.1635 2.4365 33 1 4.0085 0.3764 0.1999 34 1 4.0409 2.1841 0.0197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310517184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:21 Heat of formation + Delta-G solvation = -71.075527 kcal Electronic energy + Delta-G solvation = -15875.672246 eV Core-core repulsion = 13195.187878 eV Total energy + Delta-G solvation = -2680.484367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02031 -37.15017 -35.53066 -33.70830 -32.30219 -29.92072 -27.07470 -26.40934 -25.53838 -23.83307 -21.47580 -19.60475 -19.37477 -17.17928 -16.17018 -15.72962 -15.22336 -15.13697 -14.58698 -14.34879 -14.04076 -13.74362 -13.32098 -12.54834 -12.27838 -12.14152 -11.87899 -11.58772 -11.14074 -11.07565 -11.03154 -10.85250 -10.77070 -10.53355 -10.39975 -10.21155 -9.97412 -9.29872 -8.80255 -7.54707 -7.41319 -6.13418 -4.59281 3.18301 3.22827 3.24939 3.70816 4.13653 4.43005 4.59914 4.64730 4.76695 4.81887 5.17236 5.32462 5.36040 5.51469 5.52529 5.63971 5.69304 5.70878 5.79112 5.84571 5.87828 6.01889 6.09984 6.21004 6.28798 6.67256 6.74779 7.32801 7.47356 7.99138 8.17485 8.38103 9.06877 9.60972 10.65961 10.85133 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.052907 B = 0.005218 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.104219 B = 5364.774244 C = 5446.765877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.096 3.904 4 C -0.143 4.143 5 C 0.139 3.861 6 N -0.770 5.770 7 C 0.554 3.446 8 O -0.580 6.580 9 C -0.548 4.548 10 H 0.066 0.934 11 C 0.088 3.912 12 N -0.769 5.769 13 Si 0.908 3.092 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.268 1.268 17 C -0.164 4.164 18 C -0.136 4.136 19 C -0.124 4.124 20 H 0.038 0.962 21 H 0.047 0.953 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.378 0.622 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 2.944 14.836 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.055 3.945 4 C -0.181 4.181 5 C 0.014 3.986 6 N -0.426 5.426 7 C 0.357 3.643 8 O -0.463 6.463 9 C -0.585 4.585 10 H 0.084 0.916 11 C -0.132 4.132 12 N -0.398 5.398 13 Si 0.732 3.268 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.202 4.202 18 C -0.173 4.173 19 C -0.161 4.161 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.103 0.897 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.209 0.791 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.802 1.969 14.715 15.603 hybrid contribution -0.870 0.997 -0.780 1.536 sum -5.672 2.966 13.935 15.335 Atomic orbital electron populations 1.22735 0.81477 1.02611 1.00003 1.87928 1.19434 1.25712 1.94714 1.22476 0.95344 0.83762 0.92890 1.22213 1.01248 0.99635 0.94991 1.20744 0.97592 0.96675 0.83584 1.46157 1.48395 1.41289 1.06721 1.18207 0.80713 0.83135 0.82204 1.90598 1.36233 1.33280 1.86220 1.20862 1.26245 1.20572 0.90793 0.91571 1.25705 0.93476 0.93965 1.00050 1.70019 1.20355 1.22485 1.26930 0.86444 0.79244 0.80060 0.81014 1.19330 1.20566 1.19330 1.23556 0.98759 1.00299 0.97589 1.22773 0.96964 1.00981 0.96612 1.22988 0.94268 1.03473 0.95385 0.94317 0.93471 0.89744 0.90739 0.91473 0.93067 0.93412 0.79133 0.92099 0.89293 0.91276 0.90037 0.91474 0.90265 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.63 101.05 1.07 1.40 16 2 O -0.36 -5.33 10.44 -35.23 -0.37 -5.70 16 3 C 0.10 1.29 0.72 -89.81 -0.06 1.22 16 4 C -0.14 -2.11 4.82 -26.73 -0.13 -2.24 16 5 C 0.14 2.82 5.38 -4.04 -0.02 2.80 16 6 N -0.77 -17.93 5.55 -61.72 -0.34 -18.27 16 7 C 0.55 16.36 7.75 -12.99 -0.10 16.26 16 8 O -0.58 -19.55 15.02 5.20 0.08 -19.47 16 9 C -0.55 -15.87 9.54 -35.63 -0.34 -16.21 16 10 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 11 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 12 N -0.77 -23.64 11.83 55.55 0.66 -22.98 16 13 Si 0.91 20.46 29.56 -169.99 -5.02 15.44 16 14 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 C -0.16 -1.75 7.21 -25.92 -0.19 -1.93 16 18 C -0.14 -1.43 8.02 -25.92 -0.21 -1.64 16 19 C -0.12 -1.58 6.63 -25.92 -0.17 -1.75 16 20 H 0.04 0.38 6.85 -51.93 -0.36 0.02 16 21 H 0.05 0.56 6.47 -51.93 -0.34 0.23 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 1.00 7.95 -51.93 -0.41 0.58 16 24 H 0.07 0.95 6.49 -51.93 -0.34 0.61 16 25 H 0.05 1.16 8.04 -51.93 -0.42 0.74 16 26 H 0.05 1.02 7.65 -51.93 -0.40 0.63 16 27 H 0.38 7.63 8.45 -40.82 -0.35 7.29 16 28 H 0.27 7.47 8.29 -40.82 -0.34 7.14 16 29 H 0.09 0.85 7.97 -51.93 -0.41 0.44 16 30 H 0.07 0.69 6.82 -51.92 -0.35 0.33 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -35.27 283.41 -6.00 -41.27 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.03 Total: 5.13 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.24 Total: 0.31 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.31 Total: -41.25 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.29 Total: -25.17 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.27 -6.00 -41.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310517184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.809 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds