Wall clock time and date at job start Sun Mar 29 2020 21:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99607 * 2 1 4 4 C 1.52994 * 112.85301 * 294.86864 * 3 2 1 5 5 C 1.53001 * 109.47229 * 289.29967 * 4 3 2 6 6 N 1.46505 * 109.46991 * 174.92929 * 5 4 3 7 7 C 1.34774 * 119.99673 * 179.97438 * 6 5 4 8 8 O 1.21686 * 120.00243 * 0.02562 * 7 6 5 9 9 C 1.46375 * 119.99879 * 180.02562 * 7 6 5 10 10 H 1.08004 * 120.00105 * 0.02562 * 9 7 6 11 11 C 1.40047 * 120.00121 * 180.02562 * 9 7 6 12 12 N 1.30674 * 119.99885 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00133 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47052 * 59.99724 * 13 11 9 15 15 H 1.48497 * 109.47134 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47004 * 299.99753 * 13 11 9 17 17 C 1.53779 * 113.69087 * 66.14136 * 3 2 1 18 18 C 1.53783 * 87.08198 * 89.11988 * 17 3 2 19 19 C 1.53779 * 87.08180 * 25.43569 * 18 17 3 20 20 H 1.09002 * 109.46778 * 296.24629 * 1 2 3 21 21 H 1.08992 * 109.47024 * 56.24730 * 1 2 3 22 22 H 1.08996 * 109.46734 * 176.24725 * 1 2 3 23 23 H 1.09003 * 109.47181 * 169.29602 * 4 3 2 24 24 H 1.09000 * 109.47014 * 49.30274 * 4 3 2 25 25 H 1.08995 * 109.47016 * 54.92783 * 5 4 3 26 26 H 1.08999 * 109.46802 * 294.92875 * 5 4 3 27 27 H 0.96998 * 120.00244 * 359.97438 * 6 5 4 28 28 H 0.96997 * 119.99463 * 180.02562 * 12 11 9 29 29 H 1.08999 * 113.61551 * 203.67165 * 17 3 2 30 30 H 1.09007 * 113.61414 * 334.57784 * 17 3 2 31 31 H 1.08993 * 113.61997 * 270.88419 * 18 17 3 32 32 H 1.09008 * 113.68951 * 139.99322 * 18 17 3 33 33 H 1.09000 * 113.61466 * 220.01779 * 19 18 17 34 34 H 1.08999 * 113.61659 * 89.10771 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7102 2.0895 -1.2791 5 6 2.4888 1.4788 -2.4461 6 7 2.1098 2.1513 -3.6912 7 6 2.6726 1.7775 -4.8573 8 8 3.4952 0.8810 -4.8761 9 6 2.2944 2.4498 -6.1013 10 1 1.5645 3.2457 -6.0846 11 6 2.8788 2.0609 -7.3131 12 7 3.7622 1.0982 -7.3332 13 14 2.3966 2.9194 -8.9006 14 1 2.7142 4.3663 -8.7970 15 1 3.1526 2.3270 -10.0331 16 1 0.9400 2.7478 -9.1334 17 6 1.7411 2.1016 1.2879 18 6 3.0256 1.4718 1.8521 19 6 3.4962 1.3183 0.3962 20 1 -0.3633 0.4545 0.9217 21 1 -0.3633 0.5709 -0.8544 22 1 -0.3633 -1.0254 -0.0673 23 1 2.0098 3.1291 -1.1468 24 1 0.6421 2.0435 -1.4913 25 1 2.2565 0.4166 -2.5215 26 1 3.5579 1.6056 -2.2754 27 1 1.4538 2.8657 -3.6763 28 1 4.1672 0.8292 -8.1725 29 1 1.8062 3.1816 1.1552 30 1 0.8366 1.7921 1.8116 31 1 2.8595 0.5217 2.3598 32 1 3.6325 2.1635 2.4365 33 1 4.0085 0.3764 0.1999 34 1 4.0409 2.1841 0.0197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310517184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:20 Heat of formation + Delta-G solvation = -97.722847 kcal Electronic energy + Delta-G solvation = -15876.827760 eV Core-core repulsion = 13195.187878 eV Total energy + Delta-G solvation = -2681.639882 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05761 -39.30076 -36.53321 -35.61183 -34.51182 -31.57394 -28.46640 -27.98517 -26.58696 -25.22805 -22.74225 -21.71359 -20.38639 -19.21728 -17.52886 -17.16775 -16.77365 -16.39481 -15.98549 -15.86728 -15.69848 -15.01965 -14.70190 -14.32708 -13.95570 -13.39588 -13.11628 -13.09651 -12.79168 -12.66833 -12.60444 -12.15829 -12.08378 -12.04479 -11.85637 -11.67056 -10.99887 -10.92168 -10.36894 -9.85437 -9.49827 -8.29304 -6.87086 1.40090 1.44221 1.56167 2.24980 2.46660 2.73040 3.07543 3.53998 3.60192 3.66500 3.90147 3.99286 4.22805 4.27961 4.45321 4.49270 4.55194 4.66056 4.79413 4.84170 4.87202 4.96753 5.06171 5.09981 5.13842 5.30795 5.32599 5.41301 5.86532 6.22897 6.25479 6.35000 6.85508 7.55295 8.48718 8.67045 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.052907 B = 0.005218 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.104219 B = 5364.774244 C = 5446.765877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.083 3.917 4 C -0.129 4.129 5 C 0.145 3.855 6 N -0.756 5.756 7 C 0.533 3.467 8 O -0.635 6.635 9 C -0.575 4.575 10 H 0.090 0.910 11 C 0.026 3.974 12 N -0.825 5.825 13 Si 1.002 2.998 14 H -0.252 1.252 15 H -0.275 1.275 16 H -0.253 1.253 17 C -0.148 4.148 18 C -0.125 4.125 19 C -0.137 4.137 20 H 0.063 0.937 21 H 0.041 0.959 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.030 0.970 27 H 0.396 0.604 28 H 0.275 0.725 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 5.114 15.283 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.307 6.307 3 C 0.043 3.957 4 C -0.166 4.166 5 C 0.020 3.980 6 N -0.411 5.411 7 C 0.337 3.663 8 O -0.523 6.523 9 C -0.611 4.611 10 H 0.108 0.892 11 C -0.188 4.188 12 N -0.454 5.454 13 Si 0.821 3.179 14 H -0.176 1.176 15 H -0.199 1.199 16 H -0.177 1.177 17 C -0.185 4.185 18 C -0.162 4.162 19 C -0.174 4.174 20 H 0.081 0.919 21 H 0.060 0.940 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.096 0.904 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.229 0.771 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.498 4.173 15.218 17.066 hybrid contribution -0.349 0.271 -0.872 0.977 sum -6.847 4.444 14.347 16.506 Atomic orbital electron populations 1.22904 0.80064 1.03408 1.00966 1.87899 1.21165 1.26751 1.94894 1.22650 0.95805 0.83785 0.93459 1.22147 1.00799 1.00517 0.93185 1.20758 0.97602 0.95211 0.84434 1.45841 1.47689 1.41236 1.06316 1.18708 0.80529 0.82795 0.84258 1.90550 1.38723 1.35623 1.87420 1.21435 1.27069 1.21337 0.91307 0.89188 1.27048 0.92690 0.94359 1.04741 1.70203 1.21944 1.24603 1.28652 0.85017 0.79420 0.78929 0.74558 1.17635 1.19929 1.17734 1.23500 0.99199 1.00792 0.95016 1.22723 0.97021 1.01447 0.95054 1.23098 0.94057 1.02543 0.97733 0.91884 0.94031 0.89021 0.88532 0.90418 0.96275 0.95155 0.77056 0.91546 0.87516 0.90023 0.90239 0.89440 0.92488 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.63 113.37 1.21 1.70 16 2 O -0.39 -11.38 10.44 -148.98 -1.55 -12.93 16 3 C 0.08 2.14 0.72 -10.27 -0.01 2.13 16 4 C -0.13 -3.65 4.82 30.59 0.15 -3.50 16 5 C 0.14 6.04 5.38 86.38 0.46 6.50 16 6 N -0.76 -35.62 5.55 -467.41 -2.59 -38.21 16 7 C 0.53 32.36 7.75 86.36 0.67 33.03 16 8 O -0.64 -44.85 15.02 -4.30 -0.06 -44.91 16 9 C -0.57 -33.43 9.54 24.83 0.24 -33.19 16 10 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 11 C 0.03 1.51 5.50 85.30 0.47 1.98 16 12 N -0.82 -51.95 11.83 21.84 0.26 -51.70 16 13 Si 1.00 41.43 29.56 68.60 2.03 43.46 16 14 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 C -0.15 -2.67 7.21 31.12 0.22 -2.45 16 18 C -0.13 -2.36 8.02 31.12 0.25 -2.11 16 19 C -0.14 -3.46 6.63 31.12 0.21 -3.25 16 20 H 0.06 1.07 6.85 -2.39 -0.02 1.05 16 21 H 0.04 0.94 6.47 -2.39 -0.02 0.93 16 22 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 23 H 0.10 2.33 7.95 -2.39 -0.02 2.31 16 24 H 0.08 2.05 6.49 -2.39 -0.02 2.04 16 25 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 26 H 0.03 1.36 7.65 -2.39 -0.02 1.34 16 27 H 0.40 15.64 8.45 -92.71 -0.78 14.86 16 28 H 0.27 15.65 8.29 -92.71 -0.77 14.88 16 29 H 0.11 1.59 7.97 -2.39 -0.02 1.57 16 30 H 0.08 1.31 6.82 -2.38 -0.02 1.29 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.37 8.10 -2.39 -0.02 2.35 16 Total: -1.00 -79.69 283.41 2.25 -77.45 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.31 Total: 26.00 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 3.87 Total: 0.85 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.34 Total: -89.91 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -1.62 Total: -57.84 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -79.69 2.25 -77.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310517184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.275 kcal (2) G-P(sol) polarization free energy of solvation -79.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds