Wall clock time and date at job start Sun Mar 29 2020 21:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00182 * 2 1 4 4 H 1.09000 * 109.46838 * 329.99818 * 3 2 1 5 5 C 1.52997 * 109.47266 * 89.99755 * 3 2 1 6 6 C 1.52996 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 10 10 C 1.50699 * 109.47265 * 180.02562 * 8 7 6 11 11 O 1.21297 * 119.99980 * 119.99761 * 10 8 7 12 12 N 1.34779 * 120.00037 * 300.00185 * 10 8 7 13 13 C 1.37097 * 119.99944 * 180.02562 * 12 10 8 14 14 H 1.08003 * 120.00055 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99682 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00492 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99897 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47533 * 89.99708 * 17 15 13 19 19 H 1.48498 * 109.47096 * 210.00002 * 17 15 13 20 20 H 1.48500 * 109.46959 * 329.99458 * 17 15 13 21 21 C 1.52999 * 109.46735 * 210.00182 * 3 2 1 22 22 H 1.09009 * 109.46849 * 300.00372 * 1 2 3 23 23 H 1.08997 * 109.47063 * 60.00039 * 1 2 3 24 24 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00248 * 5 3 2 26 26 H 1.09001 * 109.47375 * 300.00231 * 5 3 2 27 27 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 29 29 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 30 30 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 31 31 H 0.96996 * 119.99844 * 359.97438 * 12 10 8 32 32 H 0.97002 * 120.00294 * 179.97438 * 16 15 13 33 33 H 1.08993 * 109.47839 * 59.99877 * 21 3 2 34 34 H 1.09000 * 109.47160 * 299.99439 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1694 1.4424 7 6 4.1881 3.1277 0.7210 8 6 3.9807 2.6617 -0.7215 9 1 3.3151 3.3554 -1.2352 10 6 5.3090 2.6201 -1.4319 11 8 5.7178 1.5752 -1.8928 12 7 6.0429 3.7438 -1.5550 13 6 7.2512 3.7060 -2.2018 14 1 7.6151 2.7757 -2.6122 15 6 8.0074 4.8647 -2.3292 16 7 7.5644 5.9968 -1.8303 17 14 9.6534 4.8134 -3.2110 18 1 9.4492 5.0845 -4.6567 19 1 10.5550 5.8441 -2.6366 20 1 10.2646 3.4707 -3.0406 21 6 3.3589 1.2631 -0.7213 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 2.8830 1.0776 1.9563 26 1 1.2569 1.8015 1.9563 27 1 2.9877 3.5012 2.4700 28 1 2.1740 3.8630 0.9286 29 1 4.8537 2.4340 1.2347 30 1 4.6313 4.1235 0.7213 31 1 5.7159 4.5794 -1.1868 32 1 8.0926 6.8055 -1.9189 33 1 3.2112 0.9312 -1.7489 34 1 4.0242 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334469183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:04 Heat of formation + Delta-G solvation = -132.067031 kcal Electronic energy + Delta-G solvation = -16068.270623 eV Core-core repulsion = 13385.141466 eV Total energy + Delta-G solvation = -2683.129157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94402 -39.39195 -37.09196 -36.01373 -33.33452 -31.86573 -30.93446 -27.27349 -27.14656 -24.25758 -23.24891 -21.33679 -20.58218 -19.89170 -18.05023 -17.21453 -16.68204 -16.26704 -15.95679 -15.83175 -15.77807 -15.21489 -14.51825 -14.42610 -14.06131 -13.56538 -13.39157 -13.11322 -12.92272 -12.59092 -12.44490 -12.27715 -12.12167 -11.98935 -11.58790 -11.54332 -11.42790 -11.40667 -10.49915 -10.18839 -10.03242 -8.48383 -5.97548 1.36847 1.40903 1.53785 2.01925 2.28616 2.74045 3.17724 3.26617 3.77422 3.87842 3.97446 4.16476 4.23944 4.32702 4.42594 4.48393 4.56898 4.60335 4.67373 4.68729 4.88655 5.01319 5.08959 5.17593 5.22233 5.25748 5.35116 5.39854 5.47452 5.98157 6.34999 6.57193 7.10021 7.53528 8.09229 8.68877 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.054907 B = 0.005817 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.833503 B = 4811.986390 C = 5161.384402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.095 3.905 4 H 0.078 0.922 5 C -0.135 4.135 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.082 4.082 9 H 0.104 0.896 10 C 0.438 3.562 11 O -0.639 6.639 12 N -0.566 5.566 13 C -0.340 4.340 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.993 3.007 18 H -0.270 1.270 19 H -0.268 1.268 20 H -0.275 1.275 21 C -0.085 4.085 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.398 0.602 32 H 0.279 0.721 33 H 0.050 0.950 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.585 -2.279 6.969 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.038 3.962 4 H 0.096 0.904 5 C -0.173 4.173 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.104 4.104 9 H 0.122 0.878 10 C 0.226 3.774 11 O -0.527 6.527 12 N -0.202 5.202 13 C -0.469 4.469 14 H 0.094 0.906 15 C -0.209 4.209 16 N -0.558 5.558 17 Si 0.816 3.184 18 H -0.195 1.195 19 H -0.193 1.193 20 H -0.199 1.199 21 C -0.124 4.124 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.119 -2.921 6.671 15.005 hybrid contribution 0.791 0.491 -0.483 1.048 sum -12.328 -2.431 6.189 14.006 Atomic orbital electron populations 1.22987 0.79535 1.03712 1.00967 1.87893 1.21518 1.28548 1.95257 1.22132 0.93419 0.84416 0.96255 0.90394 1.22009 1.02066 0.97172 0.96011 1.21463 0.94658 0.96586 1.01494 1.21560 0.99280 1.01197 0.92704 1.21059 0.93100 0.98688 0.97541 0.87757 1.20942 0.88420 0.83608 0.84383 1.90481 1.74598 1.32331 1.55323 1.41934 1.18109 1.09890 1.50270 1.19694 0.96724 0.96509 1.33974 0.90555 1.26029 1.02993 0.93985 0.97939 1.69662 1.40435 1.00059 1.45638 0.84935 0.77012 0.78097 0.78330 1.19536 1.19280 1.19941 1.21198 0.95629 0.95300 1.00224 0.92531 0.93374 0.88730 0.92316 0.89509 0.89487 0.89941 0.93074 0.91366 0.76795 0.91157 0.93084 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.41 -11.26 10.35 -148.98 -1.54 -12.80 16 3 C 0.10 2.49 2.61 30.59 0.08 2.57 16 4 H 0.08 1.73 7.79 -2.39 -0.02 1.71 16 5 C -0.13 -2.97 5.54 30.59 0.17 -2.80 16 6 C -0.10 -2.24 5.92 30.59 0.18 -2.05 16 7 C -0.11 -3.33 5.10 30.59 0.16 -3.17 16 8 C -0.08 -2.97 2.53 -11.52 -0.03 -3.00 16 9 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 10 C 0.44 21.87 7.11 87.66 0.62 22.50 16 11 O -0.64 -37.47 15.56 -3.08 -0.05 -37.51 16 12 N -0.57 -29.85 5.18 -306.98 -1.59 -31.44 16 13 C -0.34 -19.73 9.68 84.04 0.81 -18.92 16 14 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 15 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 16 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 17 Si 0.99 43.33 29.55 68.60 2.03 45.35 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C -0.09 -3.00 4.14 30.61 0.13 -2.87 16 22 H 0.06 0.80 7.87 -2.38 -0.02 0.78 16 23 H 0.05 0.77 8.08 -2.39 -0.02 0.75 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.12 7.57 -2.39 -0.02 2.10 16 31 H 0.40 19.74 7.32 -92.71 -0.68 19.06 16 32 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.05 1.96 8.10 -2.39 -0.02 1.95 16 34 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 Total: -1.00 -69.05 280.97 3.35 -65.70 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.40 Total: 26.17 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 3.81 Total: -6.14 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.31 Total: -80.77 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -1.59 Total: -50.32 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.05 3.35 -65.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334469183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.366 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds