Wall clock time and date at job start Sun Mar 29 2020 21:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99957 * 2 1 4 4 C 1.50697 * 109.47267 * 269.99889 * 3 2 1 5 5 H 1.07998 * 120.00297 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00221 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99706 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00264 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47103 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47016 * 119.99865 * 8 6 4 11 11 H 1.48500 * 109.47089 * 240.00047 * 8 6 4 12 12 C 1.34777 * 119.99855 * 180.02562 * 2 1 3 13 13 O 1.21276 * 119.99973 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99986 * 359.97438 * 12 2 1 15 15 H 1.09004 * 110.67019 * 61.78687 * 14 12 2 16 16 C 1.54884 * 110.75946 * 298.55024 * 14 12 2 17 17 C 1.54271 * 104.19770 * 203.55904 * 16 14 12 18 18 C 1.53873 * 106.59801 * 23.60933 * 17 16 14 19 19 H 1.09002 * 110.03070 * 119.28566 * 18 17 16 20 20 O 1.42901 * 110.03411 * 240.66771 * 18 17 16 21 21 C 1.54266 * 106.59800 * 0.02562 * 18 17 16 22 22 H 1.08993 * 109.47079 * 269.99914 * 1 2 3 23 23 H 1.09005 * 109.47201 * 30.00231 * 1 2 3 24 24 H 1.09005 * 109.47071 * 149.99744 * 1 2 3 25 25 H 1.08994 * 109.47106 * 30.00131 * 3 2 1 26 26 H 1.09010 * 109.46900 * 150.00173 * 3 2 1 27 27 H 0.96996 * 119.99913 * 179.97438 * 7 6 4 28 28 H 1.09002 * 110.48690 * 84.88303 * 16 14 12 29 29 H 1.09000 * 110.59769 * 322.29013 * 16 14 12 30 30 H 1.09002 * 110.02848 * 264.32935 * 17 16 14 31 31 H 1.08995 * 110.07160 * 142.91821 * 17 16 14 32 32 H 0.96698 * 114.00086 * 297.91025 * 20 18 17 33 33 H 1.08998 * 110.48638 * 95.07047 * 21 18 17 34 34 H 1.09001 * 110.48707 * 217.71134 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.8619 2.4159 -4.3673 10 1 2.8018 4.7373 -3.6675 11 1 4.9016 3.5241 -3.6668 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 1 0.7750 -2.5642 -0.8990 16 6 0.5119 -2.6019 1.2720 17 6 0.3133 -4.1223 1.4413 18 6 1.4864 -4.8025 0.7141 19 1 2.0693 -5.3954 1.4190 20 8 0.9936 -5.6366 -0.3364 21 6 2.3572 -3.6717 0.1287 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1499 1.1383 0.5139 27 1 4.0325 4.4426 -0.8503 28 1 -0.4479 -2.1055 1.1281 29 1 1.0296 -2.1862 2.1364 30 1 -0.6319 -4.4277 0.9923 31 1 0.3264 -4.3858 2.4989 32 1 0.4296 -6.3607 -0.0320 33 1 3.1749 -3.4295 0.8076 34 1 2.7441 -3.9558 -0.8499 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335826108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:01 Heat of formation + Delta-G solvation = -97.215080 kcal Electronic energy + Delta-G solvation = -16176.215603 eV Core-core repulsion = 13494.597740 eV Total energy + Delta-G solvation = -2681.617863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.69813 -37.81111 -34.79517 -34.74971 -32.53760 -29.06438 -28.47735 -27.06186 -25.71987 -23.12817 -21.00772 -20.36319 -18.37501 -17.50261 -16.51741 -16.26605 -15.60709 -15.07791 -14.47712 -14.33184 -13.73781 -13.53621 -13.05374 -12.62038 -12.17257 -12.13820 -11.91171 -11.54031 -11.32358 -11.17461 -10.94810 -10.80055 -10.72246 -10.62940 -10.52602 -10.12273 -9.95240 -9.57765 -8.78532 -8.41588 -7.59219 -6.02139 -4.06658 3.31480 3.38687 3.42370 3.49560 3.99708 4.20967 4.46469 4.52781 4.62191 4.94066 5.25915 5.31115 5.42666 5.44562 5.52409 5.66279 5.70396 5.79601 5.86216 5.92367 5.96925 6.17264 6.23976 6.34065 6.42240 7.09777 7.47278 7.58598 7.59464 7.94901 8.26471 8.47500 8.93602 9.15324 9.58603 11.05986 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.045876 B = 0.006229 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.199121 B = 4494.317570 C = 4676.842208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.511 3.489 13 O -0.543 6.543 14 C -0.112 4.112 15 H 0.098 0.902 16 C -0.114 4.114 17 C -0.155 4.155 18 C 0.097 3.903 19 H 0.058 0.942 20 O -0.565 6.565 21 C -0.096 4.096 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.262 0.738 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.372 0.628 33 H 0.090 0.910 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 -14.344 4.578 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.298 3.702 13 O -0.421 6.421 14 C -0.133 4.133 15 H 0.116 0.884 16 C -0.151 4.151 17 C -0.193 4.193 18 C 0.038 3.962 19 H 0.076 0.924 20 O -0.371 6.371 21 C -0.134 4.134 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.219 0.781 33 H 0.109 0.891 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.251 -13.718 4.262 16.566 hybrid contribution -0.277 0.108 -0.615 0.683 sum -8.527 -13.610 3.647 16.470 Atomic orbital electron populations 1.21720 0.81653 1.02440 1.00231 1.48120 1.06080 1.07811 1.71309 1.19288 0.92558 0.78214 0.97480 1.21489 1.36290 1.06203 0.92376 0.92437 1.24945 0.95380 0.96405 0.97452 1.69947 1.38500 1.14395 1.30654 0.86438 0.78090 0.78271 0.84607 1.19806 1.20964 1.20859 1.20192 0.87922 0.84928 0.77207 1.90651 1.13958 1.87224 1.50241 1.22264 0.97656 0.93644 0.99785 0.88407 1.22406 0.99981 0.95472 0.97275 1.22924 0.99154 0.96500 1.00699 1.22532 0.93815 0.91462 0.88358 0.92440 1.86590 1.70145 1.44791 1.35538 1.22203 0.96932 0.91296 1.02980 0.93751 0.90995 0.92340 0.95056 0.93874 0.92801 0.90537 0.91031 0.90803 0.91329 0.78107 0.89143 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 8.88 59.84 0.53 1.89 16 2 N -0.60 -13.10 2.86 -182.96 -0.52 -13.62 16 3 C 0.24 6.54 5.16 -5.20 -0.03 6.51 16 4 C -0.52 -15.25 9.39 -34.44 -0.32 -15.58 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 12 C 0.51 10.97 7.08 -10.99 -0.08 10.89 16 13 O -0.54 -14.07 15.38 5.56 0.09 -13.98 16 14 C -0.11 -1.77 2.33 -89.77 -0.21 -1.98 16 15 H 0.10 1.49 7.53 -51.93 -0.39 1.10 16 16 C -0.11 -1.40 5.35 -25.07 -0.13 -1.53 16 17 C -0.15 -1.53 6.61 -25.61 -0.17 -1.70 16 18 C 0.10 1.10 4.26 -25.61 -0.11 0.99 16 19 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 20 O -0.57 -6.37 13.22 -35.23 -0.47 -6.83 16 21 C -0.10 -1.44 5.60 -25.06 -0.14 -1.59 16 22 H 0.04 0.61 7.60 -51.93 -0.39 0.22 16 23 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 24 H 0.06 0.80 5.94 -51.93 -0.31 0.49 16 25 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.04 1.30 7.42 -51.92 -0.39 0.91 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.08 0.83 6.14 -51.93 -0.32 0.51 16 29 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.07 0.65 7.95 -51.93 -0.41 0.23 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.37 2.38 9.11 45.56 0.41 2.80 16 33 H 0.09 1.44 7.54 -51.93 -0.39 1.05 16 34 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 279.61 15.07 4.21 4.21 Total: -1.00 -34.47 279.61 -5.98 -40.45 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.25 Total: -0.73 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.76 Total: -0.43 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.21 Total: -39.93 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.38 Total: -20.82 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.47 -5.98 -40.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335826108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.765 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds