Wall clock time and date at job start Sun Mar 29 2020 21:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99957 * 2 1 4 4 C 1.50697 * 109.47267 * 269.99889 * 3 2 1 5 5 H 1.07998 * 120.00297 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00221 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99706 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00264 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47103 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47016 * 119.99865 * 8 6 4 11 11 H 1.48500 * 109.47089 * 240.00047 * 8 6 4 12 12 C 1.34777 * 119.99855 * 180.02562 * 2 1 3 13 13 O 1.21276 * 119.99973 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99986 * 359.97438 * 12 2 1 15 15 H 1.09004 * 110.67019 * 61.78687 * 14 12 2 16 16 C 1.54884 * 110.75946 * 298.55024 * 14 12 2 17 17 C 1.54271 * 104.19770 * 203.55904 * 16 14 12 18 18 C 1.53873 * 106.59801 * 23.60933 * 17 16 14 19 19 H 1.09002 * 110.03070 * 119.28566 * 18 17 16 20 20 O 1.42901 * 110.03411 * 240.66771 * 18 17 16 21 21 C 1.54266 * 106.59800 * 0.02562 * 18 17 16 22 22 H 1.08993 * 109.47079 * 269.99914 * 1 2 3 23 23 H 1.09005 * 109.47201 * 30.00231 * 1 2 3 24 24 H 1.09005 * 109.47071 * 149.99744 * 1 2 3 25 25 H 1.08994 * 109.47106 * 30.00131 * 3 2 1 26 26 H 1.09010 * 109.46900 * 150.00173 * 3 2 1 27 27 H 0.96996 * 119.99913 * 179.97438 * 7 6 4 28 28 H 1.09002 * 110.48690 * 84.88303 * 16 14 12 29 29 H 1.09000 * 110.59769 * 322.29013 * 16 14 12 30 30 H 1.09002 * 110.02848 * 264.32935 * 17 16 14 31 31 H 1.08995 * 110.07160 * 142.91821 * 17 16 14 32 32 H 0.96698 * 114.00086 * 297.91025 * 20 18 17 33 33 H 1.08998 * 110.48638 * 95.07047 * 21 18 17 34 34 H 1.09001 * 110.48707 * 217.71134 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.8619 2.4159 -4.3673 10 1 2.8018 4.7373 -3.6675 11 1 4.9016 3.5241 -3.6668 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 1 0.7750 -2.5642 -0.8990 16 6 0.5119 -2.6019 1.2720 17 6 0.3133 -4.1223 1.4413 18 6 1.4864 -4.8025 0.7141 19 1 2.0693 -5.3954 1.4190 20 8 0.9936 -5.6366 -0.3364 21 6 2.3572 -3.6717 0.1287 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1499 1.1383 0.5139 27 1 4.0325 4.4426 -0.8503 28 1 -0.4479 -2.1055 1.1281 29 1 1.0296 -2.1862 2.1364 30 1 -0.6319 -4.4277 0.9923 31 1 0.3264 -4.3858 2.4989 32 1 0.4296 -6.3607 -0.0320 33 1 3.1749 -3.4295 0.8076 34 1 2.7441 -3.9558 -0.8499 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335826108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:01 Heat of formation + Delta-G solvation = -123.641488 kcal Electronic energy + Delta-G solvation = -16177.361538 eV Core-core repulsion = 13494.597740 eV Total energy + Delta-G solvation = -2682.763798 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14464 -39.01640 -36.63280 -35.80397 -34.65947 -30.52732 -29.73939 -28.50196 -27.33462 -25.06433 -22.32193 -21.34141 -19.88917 -18.75922 -18.47140 -17.70576 -17.18417 -16.55539 -16.28739 -15.55806 -15.09701 -14.78781 -14.33427 -14.22240 -13.82367 -13.49230 -13.46810 -13.10666 -12.94932 -12.78150 -12.52818 -12.31358 -12.22924 -12.02953 -11.75823 -11.68208 -11.49633 -10.78568 -10.66992 -10.52211 -9.42737 -8.24811 -6.40035 1.34376 1.37135 1.49075 1.82047 2.30802 2.45074 3.04350 3.38067 3.44990 3.60983 3.87439 4.22425 4.34175 4.41483 4.47337 4.53466 4.56129 4.69619 4.85309 4.87995 4.96447 5.00844 5.09622 5.19377 5.22695 5.24675 5.36064 5.54396 5.83209 6.04119 6.67557 6.78143 7.02151 7.25861 7.47168 8.82486 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.045876 B = 0.006229 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.199121 B = 4494.317570 C = 4676.842208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.500 3.500 13 O -0.602 6.602 14 C -0.103 4.103 15 H 0.110 0.890 16 C -0.110 4.110 17 C -0.143 4.143 18 C 0.105 3.895 19 H 0.075 0.925 20 O -0.583 6.583 21 C -0.104 4.104 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.025 0.975 26 H -0.004 1.004 27 H 0.268 0.732 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.396 0.604 33 H 0.070 0.930 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -15.710 4.243 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.191 1.191 11 H -0.207 1.207 12 C 0.289 3.711 13 O -0.484 6.484 14 C -0.124 4.124 15 H 0.128 0.872 16 C -0.148 4.148 17 C -0.180 4.180 18 C 0.047 3.953 19 H 0.093 0.907 20 O -0.392 6.392 21 C -0.142 4.142 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.043 0.957 26 H 0.014 0.986 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.629 -15.112 3.940 18.891 hybrid contribution 0.460 0.519 -0.485 0.846 sum -10.169 -14.593 3.455 18.119 Atomic orbital electron populations 1.22036 0.77972 1.03728 1.02640 1.48155 1.08391 1.06275 1.71030 1.18770 0.91112 0.80530 0.96014 1.21736 1.36929 1.06602 0.93040 0.93109 1.25881 0.94808 0.96363 1.02136 1.70058 1.38872 1.14874 1.33008 0.85343 0.77936 0.78446 0.78924 1.19297 1.19091 1.20666 1.21306 0.87661 0.86577 0.75550 1.90611 1.16805 1.88212 1.52727 1.22258 0.97855 0.89982 1.02328 0.87196 1.22450 0.99822 0.97975 0.94544 1.22875 0.99209 0.93808 1.02113 1.22375 0.94117 0.90633 0.88206 0.90748 1.86530 1.70886 1.45786 1.35969 1.22201 0.97237 0.92926 1.01801 0.90670 0.91696 0.89079 0.95652 0.98555 0.92322 0.88322 0.92184 0.88650 0.89028 0.75407 0.91146 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 8.88 127.77 1.13 3.53 16 2 N -0.61 -26.84 2.86 -851.15 -2.43 -29.27 16 3 C 0.26 14.39 5.16 85.63 0.44 14.83 16 4 C -0.54 -32.50 9.39 25.60 0.24 -32.26 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.41 5.46 84.65 0.46 0.88 16 7 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 8 Si 0.97 46.01 29.54 68.60 2.03 48.03 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.50 21.99 7.08 87.66 0.62 22.61 16 13 O -0.60 -33.02 15.38 -3.02 -0.05 -33.07 16 14 C -0.10 -3.14 2.33 -10.24 -0.02 -3.17 16 15 H 0.11 3.11 7.53 -2.39 -0.02 3.09 16 16 C -0.11 -2.38 5.35 31.67 0.17 -2.21 16 17 C -0.14 -2.19 6.61 31.32 0.21 -1.98 16 18 C 0.11 2.10 4.26 31.32 0.13 2.23 16 19 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 20 O -0.58 -11.30 13.22 -148.98 -1.97 -13.27 16 21 C -0.10 -3.09 5.60 31.68 0.18 -2.91 16 22 H 0.07 1.86 7.60 -2.39 -0.02 1.84 16 23 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 24 H 0.09 2.19 5.94 -2.38 -0.01 2.18 16 25 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 26 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.10 1.70 6.14 -2.39 -0.01 1.69 16 29 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 30 H 0.09 1.13 7.95 -2.39 -0.02 1.11 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.40 3.50 9.11 -74.06 -0.67 2.82 16 33 H 0.07 2.35 7.54 -2.39 -0.02 2.33 16 34 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 Total: -1.00 -78.66 279.61 1.84 -76.81 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.42 Total: 6.23 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 3.56 Total: 1.54 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.15 Total: -86.27 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -2.02 Total: -46.34 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.66 1.84 -76.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335826108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.830 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds