Wall clock time and date at job start Sun Mar 29 2020 22:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47804 * 2 1 4 4 C 1.53000 * 109.46921 * 300.00151 * 3 2 1 5 5 C 1.53002 * 109.46954 * 299.99829 * 4 3 2 6 6 O 1.42901 * 109.47160 * 299.99819 * 5 4 3 7 7 C 1.53002 * 109.46786 * 180.02562 * 5 4 3 8 8 N 1.46501 * 109.46874 * 184.99734 * 7 5 4 9 9 C 1.46494 * 120.00222 * 269.99850 * 8 7 5 10 10 C 1.36936 * 119.99865 * 89.99795 * 8 7 5 11 11 H 1.08000 * 120.00234 * 23.30427 * 10 8 7 12 12 C 1.38814 * 120.00205 * 203.29786 * 10 8 7 13 13 N 1.31619 * 119.99630 * 11.25918 * 12 10 8 14 14 Si 1.86799 * 120.00428 * 191.25477 * 12 10 8 15 15 H 1.48501 * 109.46850 * 90.00071 * 14 12 10 16 16 H 1.48501 * 109.47430 * 210.00141 * 14 12 10 17 17 H 1.48498 * 109.47143 * 330.00655 * 14 12 10 18 18 C 1.52991 * 109.47162 * 60.00280 * 5 4 3 19 19 C 1.53002 * 109.47320 * 299.99734 * 18 5 4 20 20 H 1.08999 * 109.47561 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47132 * 300.00261 * 1 2 3 22 22 H 1.09003 * 109.47129 * 59.99460 * 1 2 3 23 23 H 1.09003 * 109.47129 * 120.00540 * 2 1 3 24 24 H 1.08993 * 109.47156 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46499 * 59.99594 * 3 2 1 26 26 H 1.09000 * 109.47186 * 179.97438 * 4 3 2 27 27 H 1.09006 * 109.47255 * 59.99679 * 4 3 2 28 28 H 0.96690 * 114.00399 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46984 * 304.99425 * 7 5 4 30 30 H 1.08992 * 109.47349 * 64.99625 * 7 5 4 31 31 H 1.08996 * 109.47304 * 94.92000 * 9 8 7 32 32 H 1.09003 * 109.47162 * 214.92606 * 9 8 7 33 33 H 1.09008 * 109.47085 * 334.91767 * 9 8 7 34 34 H 0.97005 * 120.00048 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47603 * 59.99930 * 18 5 4 36 36 H 1.09007 * 109.46985 * 180.02562 * 18 5 4 37 37 H 1.09000 * 109.47374 * 180.02562 * 19 18 5 38 38 H 1.09006 * 109.47061 * 300.00407 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5302 2.1637 -1.2492 5 6 2.0401 1.4424 -2.4985 6 8 3.4691 1.4423 -2.4985 7 6 1.5306 2.1641 -3.7477 8 7 1.9182 1.4075 -4.9409 9 6 3.1962 1.6847 -5.6010 10 6 1.0857 0.4411 -5.4391 11 1 0.0282 0.4749 -5.2221 12 6 1.6009 -0.5820 -6.2232 13 7 2.9030 -0.7546 -6.3074 14 14 0.4462 -1.7138 -7.1588 15 1 0.1838 -1.1487 -8.5067 16 1 1.0709 -3.0540 -7.2969 17 1 -0.8339 -1.8384 -6.4165 18 6 1.5300 0.0000 -2.4985 19 6 2.0399 -0.7213 -1.2492 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.1301 1.4423 0.0005 25 1 1.6767 1.9563 0.8900 26 1 1.8932 3.1915 -1.2490 27 1 0.4401 2.1638 -1.2492 28 1 3.8624 1.0009 -3.2636 29 1 0.4443 2.2427 -3.7042 30 1 1.9656 3.1624 -3.7934 31 1 3.9531 0.9922 -5.2328 32 1 3.0833 1.5607 -6.6780 33 1 3.5032 2.7078 -5.3834 34 1 3.2630 -1.4698 -6.8550 35 1 0.4400 0.0001 -2.4985 36 1 1.8937 -0.5140 -3.3883 37 1 1.6768 -1.7491 -1.2495 38 1 3.1300 -0.7214 -1.2492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336454410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:03 Heat of formation + Delta-G solvation = -50.223321 kcal Electronic energy + Delta-G solvation = -17517.016011 eV Core-core repulsion = 14973.268958 eV Total energy + Delta-G solvation = -2543.747053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.26694 -35.88033 -34.27053 -31.39704 -30.38636 -29.88611 -27.13758 -25.81851 -24.79738 -22.14793 -21.40075 -19.89323 -18.24204 -16.63616 -15.58964 -15.32738 -14.79916 -14.16427 -13.98423 -13.68648 -13.28248 -12.90096 -12.68534 -12.31810 -11.86745 -11.47690 -11.36091 -11.28099 -11.11436 -10.95160 -10.85054 -10.62857 -10.40799 -10.28906 -10.03442 -9.98875 -9.85733 -9.72430 -9.20855 -8.95327 -8.44708 -6.71693 -5.74046 -3.19667 3.36782 3.44034 3.44419 4.48848 4.99005 5.14091 5.26415 5.37555 5.43094 5.52481 5.70003 5.88293 5.89356 5.91060 6.00884 6.12024 6.20029 6.24541 6.30413 6.36349 6.44139 6.51317 6.62221 6.72050 6.74398 6.77705 6.87464 6.93493 7.15071 7.35510 7.51225 7.67717 7.79285 8.37791 8.62416 9.22933 9.85122 10.35236 11.30375 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030839 B = 0.009780 C = 0.008502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.720276 B = 2862.180101 C = 3292.431232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.105 4.105 5 C 0.117 3.883 6 O -0.570 6.570 7 C 0.126 3.874 8 N -0.602 5.602 9 C 0.162 3.838 10 C -0.246 4.246 11 H 0.066 0.934 12 C 0.002 3.998 13 N -0.908 5.908 14 Si 0.900 3.100 15 H -0.289 1.289 16 H -0.292 1.292 17 H -0.280 1.280 18 C -0.133 4.133 19 C -0.110 4.110 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.380 0.620 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.041 0.959 33 H -0.002 1.002 34 H 0.252 0.748 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 2.856 9.522 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.074 3.926 6 O -0.379 6.379 7 C -0.002 4.002 8 N -0.326 5.326 9 C 0.017 3.983 10 C -0.376 4.376 11 H 0.084 0.916 12 C -0.196 4.196 13 N -0.553 5.553 14 Si 0.731 3.269 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.206 1.206 18 C -0.170 4.170 19 C -0.147 4.147 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.229 0.771 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.017 0.983 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.168 3.058 9.950 10.632 hybrid contribution -0.524 -1.082 -1.084 1.619 sum -2.692 1.976 8.865 9.473 Atomic orbital electron populations 1.21931 0.95974 1.01205 1.01516 1.21084 0.95369 0.96297 0.98118 1.21422 1.01149 0.94930 0.96784 1.21521 0.99838 0.98725 0.94181 1.21848 0.81085 0.95059 0.94616 1.86253 1.19651 1.81719 1.50252 1.21534 0.98010 0.93850 0.86765 1.43938 1.20498 1.41486 1.26630 1.20834 0.87058 0.93251 0.97120 1.19124 0.89665 1.01694 1.27086 0.91624 1.24979 0.95675 0.97383 1.01544 1.70029 1.09894 1.33020 1.42375 0.86310 0.80179 0.80220 0.80194 1.21634 1.21792 1.20555 1.22101 1.00222 0.96223 0.98501 1.21509 1.00679 0.97898 0.94625 0.93295 0.93599 0.91765 0.92497 0.91533 0.93331 0.92457 0.91364 0.77080 0.93490 0.94005 0.95178 0.93978 0.98314 0.93759 0.92507 0.88190 0.93282 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.50 37.16 0.32 -1.71 16 2 C -0.09 -1.33 3.19 -90.62 -0.29 -1.62 16 3 C -0.11 -1.57 5.30 -26.73 -0.14 -1.71 16 4 C -0.10 -1.68 4.67 -26.73 -0.12 -1.80 16 5 C 0.12 2.21 0.79 -90.62 -0.07 2.14 16 6 O -0.57 -11.46 11.59 -35.23 -0.41 -11.86 16 7 C 0.13 2.59 5.02 -4.04 -0.02 2.57 16 8 N -0.60 -14.42 2.45 -181.12 -0.44 -14.86 16 9 C 0.16 3.85 8.09 59.84 0.48 4.33 16 10 C -0.25 -6.41 7.42 -15.06 -0.11 -6.52 16 11 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 12 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 13 N -0.91 -25.18 10.63 55.49 0.59 -24.59 16 14 Si 0.90 21.45 29.57 -169.99 -5.03 16.43 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.13 -2.61 3.86 -26.73 -0.10 -2.71 16 19 C -0.11 -1.89 5.31 -26.73 -0.14 -2.03 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.93 4.81 -51.93 -0.25 0.68 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 28 H 0.38 8.07 6.67 45.56 0.30 8.37 16 29 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 30 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 31 H 0.03 0.75 6.22 -51.93 -0.32 0.43 16 32 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 33 H 0.00 -0.04 7.84 -51.92 -0.41 -0.44 16 34 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.06 1.11 6.43 -51.93 -0.33 0.77 16 36 H 0.10 2.39 6.29 -51.93 -0.33 2.07 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -26.76 281.09 -7.10 -33.86 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.76 Total: 5.88 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.29 Total: -9.08 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.15 Total: -39.45 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.41 Total: -11.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.76 -7.10 -33.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336454410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.362 kcal (2) G-P(sol) polarization free energy of solvation -26.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds