Wall clock time and date at job start Sun Mar 29 2020 22:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47804 * 2 1 4 4 C 1.53000 * 109.46921 * 300.00151 * 3 2 1 5 5 C 1.53002 * 109.46954 * 299.99829 * 4 3 2 6 6 O 1.42901 * 109.47160 * 299.99819 * 5 4 3 7 7 C 1.53002 * 109.46786 * 180.02562 * 5 4 3 8 8 N 1.46501 * 109.46874 * 184.99734 * 7 5 4 9 9 C 1.46494 * 120.00222 * 269.99850 * 8 7 5 10 10 C 1.36936 * 119.99865 * 89.99795 * 8 7 5 11 11 H 1.08000 * 120.00234 * 23.30427 * 10 8 7 12 12 C 1.38814 * 120.00205 * 203.29786 * 10 8 7 13 13 N 1.31619 * 119.99630 * 11.25918 * 12 10 8 14 14 Si 1.86799 * 120.00428 * 191.25477 * 12 10 8 15 15 H 1.48501 * 109.46850 * 90.00071 * 14 12 10 16 16 H 1.48501 * 109.47430 * 210.00141 * 14 12 10 17 17 H 1.48498 * 109.47143 * 330.00655 * 14 12 10 18 18 C 1.52991 * 109.47162 * 60.00280 * 5 4 3 19 19 C 1.53002 * 109.47320 * 299.99734 * 18 5 4 20 20 H 1.08999 * 109.47561 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47132 * 300.00261 * 1 2 3 22 22 H 1.09003 * 109.47129 * 59.99460 * 1 2 3 23 23 H 1.09003 * 109.47129 * 120.00540 * 2 1 3 24 24 H 1.08993 * 109.47156 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.46499 * 59.99594 * 3 2 1 26 26 H 1.09000 * 109.47186 * 179.97438 * 4 3 2 27 27 H 1.09006 * 109.47255 * 59.99679 * 4 3 2 28 28 H 0.96690 * 114.00399 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46984 * 304.99425 * 7 5 4 30 30 H 1.08992 * 109.47349 * 64.99625 * 7 5 4 31 31 H 1.08996 * 109.47304 * 94.92000 * 9 8 7 32 32 H 1.09003 * 109.47162 * 214.92606 * 9 8 7 33 33 H 1.09008 * 109.47085 * 334.91767 * 9 8 7 34 34 H 0.97005 * 120.00048 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47603 * 59.99930 * 18 5 4 36 36 H 1.09007 * 109.46985 * 180.02562 * 18 5 4 37 37 H 1.09000 * 109.47374 * 180.02562 * 19 18 5 38 38 H 1.09006 * 109.47061 * 300.00407 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5302 2.1637 -1.2492 5 6 2.0401 1.4424 -2.4985 6 8 3.4691 1.4423 -2.4985 7 6 1.5306 2.1641 -3.7477 8 7 1.9182 1.4075 -4.9409 9 6 3.1962 1.6847 -5.6010 10 6 1.0857 0.4411 -5.4391 11 1 0.0282 0.4749 -5.2221 12 6 1.6009 -0.5820 -6.2232 13 7 2.9030 -0.7546 -6.3074 14 14 0.4462 -1.7138 -7.1588 15 1 0.1838 -1.1487 -8.5067 16 1 1.0709 -3.0540 -7.2969 17 1 -0.8339 -1.8384 -6.4165 18 6 1.5300 0.0000 -2.4985 19 6 2.0399 -0.7213 -1.2492 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.1301 1.4423 0.0005 25 1 1.6767 1.9563 0.8900 26 1 1.8932 3.1915 -1.2490 27 1 0.4401 2.1638 -1.2492 28 1 3.8624 1.0009 -3.2636 29 1 0.4443 2.2427 -3.7042 30 1 1.9656 3.1624 -3.7934 31 1 3.9531 0.9922 -5.2328 32 1 3.0833 1.5607 -6.6780 33 1 3.5032 2.7078 -5.3834 34 1 3.2630 -1.4698 -6.8550 35 1 0.4400 0.0001 -2.4985 36 1 1.8937 -0.5140 -3.3883 37 1 1.6768 -1.7491 -1.2495 38 1 3.1300 -0.7214 -1.2492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336454410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:03 Heat of formation + Delta-G solvation = -65.928538 kcal Electronic energy + Delta-G solvation = -17517.697041 eV Core-core repulsion = 14973.268958 eV Total energy + Delta-G solvation = -2544.428083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72686 -37.50697 -35.96806 -33.26089 -31.84102 -31.40087 -28.53594 -27.81156 -26.30467 -23.65847 -23.05500 -21.46626 -19.61502 -18.59449 -17.20293 -16.73914 -16.66011 -15.69569 -15.44351 -15.22349 -15.05330 -14.44384 -14.20678 -13.69739 -13.55644 -13.09998 -12.86796 -12.82824 -12.67007 -12.60275 -12.39217 -12.29097 -12.08841 -12.02301 -11.87011 -11.57706 -11.29547 -11.12582 -10.68766 -10.66476 -10.30291 -8.67640 -7.78332 -5.24759 1.45744 1.47841 1.54614 2.52398 3.35459 3.51723 3.68473 3.97277 4.02689 4.07149 4.35107 4.47930 4.51918 4.61480 4.73158 4.75862 4.81784 4.87211 4.96242 4.98561 5.07042 5.13852 5.19861 5.22122 5.33706 5.35428 5.42877 5.50925 5.54775 5.67368 5.72600 5.75878 5.86780 6.36047 6.93305 7.19892 7.89510 8.34973 9.24376 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030839 B = 0.009780 C = 0.008502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.720276 B = 2862.180101 C = 3292.431232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.102 4.102 4 C -0.101 4.101 5 C 0.118 3.882 6 O -0.572 6.572 7 C 0.123 3.877 8 N -0.612 5.612 9 C 0.177 3.823 10 C -0.242 4.242 11 H 0.065 0.935 12 C -0.046 4.046 13 N -0.933 5.933 14 Si 0.955 3.045 15 H -0.291 1.291 16 H -0.298 1.298 17 H -0.271 1.271 18 C -0.123 4.123 19 C -0.107 4.107 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.371 0.629 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 3.565 11.338 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.076 3.924 6 O -0.379 6.379 7 C -0.003 4.003 8 N -0.336 5.336 9 C 0.032 3.968 10 C -0.372 4.372 11 H 0.083 0.917 12 C -0.241 4.241 13 N -0.580 5.580 14 Si 0.784 3.216 15 H -0.218 1.218 16 H -0.225 1.225 17 H -0.196 1.196 18 C -0.161 4.161 19 C -0.144 4.144 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.220 0.780 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.446 3.791 11.792 12.856 hybrid contribution -0.141 -1.256 -1.624 2.058 sum -3.587 2.535 10.168 11.076 Atomic orbital electron populations 1.21901 0.94715 1.01644 1.02086 1.21074 0.96351 0.96058 0.97005 1.21405 1.00248 0.95022 0.97248 1.21532 1.00691 0.98761 0.92937 1.21874 0.80364 0.94727 0.95474 1.86269 1.20448 1.81484 1.49723 1.21694 0.98464 0.93944 0.86236 1.44077 1.20164 1.41335 1.28003 1.20587 0.86854 0.94081 0.95282 1.19286 0.89861 1.01683 1.26371 0.91718 1.25579 0.96795 0.98912 1.02863 1.70171 1.11139 1.33475 1.43178 0.85445 0.78927 0.78241 0.78944 1.21807 1.22503 1.19557 1.21907 0.99961 0.96561 0.97637 1.21464 0.99693 0.98180 0.95094 0.93049 0.91263 0.92876 0.90811 0.93029 0.90441 0.91675 0.89849 0.78045 0.92886 0.93064 0.96778 0.96715 0.95949 0.94525 0.92514 0.92949 0.93199 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.50 71.98 0.61 -2.85 16 2 C -0.09 -2.30 3.19 -10.79 -0.03 -2.34 16 3 C -0.10 -2.69 5.30 30.59 0.16 -2.53 16 4 C -0.10 -2.95 4.67 30.60 0.14 -2.81 16 5 C 0.12 4.33 0.79 -10.80 -0.01 4.32 16 6 O -0.57 -22.76 11.59 -148.98 -1.73 -24.49 16 7 C 0.12 4.91 5.02 86.38 0.43 5.34 16 8 N -0.61 -29.37 2.45 -726.94 -1.78 -31.15 16 9 C 0.18 8.52 8.09 127.77 1.03 9.55 16 10 C -0.24 -12.65 7.42 84.03 0.62 -12.03 16 11 H 0.07 3.36 7.85 -2.91 -0.02 3.33 16 12 C -0.05 -2.51 5.13 84.86 0.44 -2.07 16 13 N -0.93 -53.14 10.63 21.65 0.23 -52.91 16 14 Si 0.95 44.55 29.57 68.60 2.03 46.58 16 15 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 16 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C -0.12 -4.78 3.86 30.59 0.12 -4.67 16 19 C -0.11 -3.59 5.31 30.60 0.16 -3.42 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.05 1.37 4.81 -2.39 -0.01 1.36 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.53 7.68 -2.39 -0.02 1.51 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 2.21 6.43 -2.38 -0.02 2.19 16 28 H 0.37 16.12 6.67 -74.06 -0.49 15.62 16 29 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 30 H 0.05 1.94 7.86 -2.39 -0.02 1.93 16 31 H 0.01 0.72 6.22 -2.39 -0.01 0.71 16 32 H 0.01 0.75 7.30 -2.39 -0.02 0.74 16 33 H 0.02 0.94 7.84 -2.38 -0.02 0.93 16 34 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 35 H 0.06 2.17 6.43 -2.39 -0.02 2.16 16 36 H 0.05 2.56 6.29 -2.38 -0.01 2.54 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.64 7.68 -2.38 -0.02 1.62 16 Total: -1.00 -57.11 281.09 2.97 -54.14 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.53 Total: 21.34 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.68 Total: -13.51 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.55 Total: -84.06 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.73 Total: -24.49 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -57.11 2.97 -54.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336454410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.784 kcal (2) G-P(sol) polarization free energy of solvation -57.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds