Wall clock time and date at job start Sun Mar 29 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 N 1.46897 * 110.45518 * 305.07848 * 3 2 1 5 5 C 1.46900 * 111.00350 * 298.32698 * 4 3 2 6 6 C 1.52999 * 109.47022 * 184.83033 * 5 4 3 7 7 C 1.52996 * 109.46842 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47227 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99442 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00520 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99914 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00490 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47404 * 179.97438 * 12 10 8 14 14 H 1.48505 * 109.47082 * 59.99831 * 12 10 8 15 15 H 1.48498 * 109.47184 * 300.00058 * 12 10 8 16 16 C 1.54502 * 110.50982 * 67.68873 * 3 2 1 17 17 C 1.54801 * 103.91468 * 118.81480 * 16 3 2 18 18 O 1.44420 * 104.79977 * 335.91649 * 17 16 3 19 19 C 1.44426 * 105.28051 * 40.58598 * 18 17 16 20 20 H 1.08995 * 109.47138 * 185.47882 * 1 2 3 21 21 H 1.08994 * 109.46999 * 305.48114 * 1 2 3 22 22 H 1.09000 * 109.46780 * 65.48206 * 1 2 3 23 23 H 1.09001 * 109.47208 * 239.99691 * 2 1 3 24 24 H 1.09001 * 109.47076 * 120.00192 * 2 1 3 25 25 H 1.00900 * 110.99861 * 62.28316 * 4 3 2 26 26 H 1.09000 * 109.47151 * 64.82854 * 5 4 3 27 27 H 1.09002 * 109.46849 * 304.82714 * 5 4 3 28 28 H 1.09000 * 109.47304 * 59.99914 * 6 5 4 29 29 H 1.09002 * 109.47048 * 299.99559 * 6 5 4 30 30 H 1.09006 * 109.47562 * 59.99954 * 7 6 5 31 31 H 1.09004 * 109.47553 * 299.99818 * 7 6 5 32 32 H 0.96999 * 119.99574 * 359.97438 * 11 10 8 33 33 H 1.09002 * 110.50781 * 237.42223 * 16 3 2 34 34 H 1.08999 * 110.51744 * 0.13553 * 16 3 2 35 35 H 1.08994 * 110.30980 * 217.11206 * 17 16 3 36 36 H 1.09001 * 110.52578 * 94.82090 * 17 16 3 37 37 H 1.09001 * 110.37513 * 200.65947 * 19 18 17 38 38 H 1.09000 * 110.46820 * 78.36371 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4654 2.1902 -1.1264 5 6 1.8644 1.5976 -2.4100 6 6 1.3488 2.4697 -3.5565 7 6 1.7649 1.8528 -4.8933 8 6 1.2566 2.7115 -6.0227 9 1 0.6935 3.6078 -5.8083 10 6 1.5105 2.3529 -7.3295 11 7 2.1958 1.2612 -7.5906 12 14 0.8810 3.4175 -8.7294 13 1 1.2848 2.8188 -10.0270 14 1 1.4585 4.7807 -8.6128 15 1 -0.6001 3.5000 -8.6613 16 6 1.7025 2.1360 1.3387 17 6 3.0864 2.5045 1.9264 18 8 4.0065 1.5746 1.3144 19 6 3.5833 1.4709 -0.0625 20 1 -0.3633 -1.0229 0.0981 21 1 -0.3633 0.5965 0.8368 22 1 -0.3633 0.4265 -0.9350 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.4607 2.2440 -1.0497 26 1 1.4406 0.5970 -2.4956 27 1 2.9516 1.5372 -2.4599 28 1 1.7726 3.4703 -3.4708 29 1 0.2616 2.5301 -3.5065 30 1 1.3415 0.8521 -4.9792 31 1 2.8522 1.7928 -4.9431 32 1 2.5230 0.7085 -6.8637 33 1 1.1092 3.0337 1.1649 34 1 1.1744 1.4505 2.0016 35 1 3.0834 2.3785 3.0090 36 1 3.3522 3.5288 1.6650 37 1 3.9621 0.5509 -0.5077 38 1 3.9241 2.3355 -0.6322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379630947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:35 Heat of formation + Delta-G solvation = -92.801290 kcal Electronic energy + Delta-G solvation = -16234.209877 eV Core-core repulsion = 13688.616505 eV Total energy + Delta-G solvation = -2545.593373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09336 -37.84478 -36.17528 -34.18379 -31.85108 -31.26397 -29.33711 -27.36142 -24.82797 -24.35606 -23.53146 -21.95643 -20.32625 -18.89701 -17.35533 -17.08853 -16.94218 -16.05924 -15.87514 -15.65330 -15.34696 -15.12864 -14.84610 -14.27336 -13.60328 -13.52311 -13.37938 -13.10962 -12.77337 -12.55899 -12.47447 -12.13641 -12.04108 -11.98811 -11.83195 -11.75084 -11.63825 -11.46577 -10.74271 -10.66408 -10.54899 -9.45133 -8.69962 -6.40312 1.52321 1.61050 1.80530 2.56540 2.84918 3.15102 3.26104 3.44860 3.74528 3.82131 4.07528 4.18289 4.24578 4.30872 4.34614 4.42634 4.53282 4.59597 4.71211 4.74559 4.81007 4.84379 4.85844 4.94513 5.00941 5.04669 5.06607 5.15425 5.26837 5.42505 5.52390 5.71372 5.96538 6.07338 6.17775 6.40896 6.57380 7.41984 8.70874 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044775 B = 0.004875 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.205528 B = 5742.014820 C = 5887.491826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.082 3.918 4 N -0.671 5.671 5 C 0.070 3.930 6 C -0.084 4.084 7 C 0.009 3.991 8 C -0.620 4.620 9 H 0.050 0.950 10 C -0.040 4.040 11 N -0.938 5.938 12 Si 1.119 2.881 13 H -0.283 1.283 14 H -0.269 1.269 15 H -0.268 1.268 16 C -0.136 4.136 17 C 0.042 3.958 18 O -0.394 6.394 19 C 0.054 3.946 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.349 0.651 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.050 0.950 30 H -0.012 1.012 31 H -0.013 1.013 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 0.565 19.476 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C -0.009 4.009 4 N -0.304 5.304 5 C -0.059 4.059 6 C -0.122 4.122 7 C -0.028 4.028 8 C -0.657 4.657 9 H 0.069 0.931 10 C -0.237 4.237 11 N -0.576 5.576 12 Si 0.939 3.061 13 H -0.208 1.208 14 H -0.194 1.194 15 H -0.193 1.193 16 C -0.174 4.174 17 C -0.034 4.034 18 O -0.312 6.312 19 C -0.023 4.023 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.169 0.831 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.006 0.994 31 H 0.005 0.995 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.160 1.070 17.962 18.123 hybrid contribution -0.350 -1.139 1.215 1.702 sum -2.510 -0.070 19.177 19.341 Atomic orbital electron populations 1.21782 0.94528 1.02680 1.01945 1.22138 0.97310 0.96459 1.02329 1.22346 0.94343 0.92398 0.91854 1.60715 1.16352 1.52852 1.00440 1.21841 0.99826 0.95573 0.88684 1.21233 0.99618 0.98613 0.92760 1.19144 0.94387 0.95078 0.94230 1.22514 1.38072 1.11301 0.93859 0.93129 1.27490 0.94636 0.98354 1.03264 1.70927 1.36045 1.14972 1.35646 0.82926 0.76662 0.74090 0.72403 1.20838 1.19414 1.19265 1.23053 0.98304 1.01829 0.94222 1.23624 0.87431 0.93057 0.99313 1.89082 1.54334 1.65205 1.22626 1.23468 0.93178 1.01743 0.83911 0.91775 0.90802 0.93803 0.93071 0.90415 0.83116 0.95403 0.92171 0.93057 0.93110 0.99419 0.99497 0.93647 0.88996 0.88831 0.87108 0.92080 0.89631 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.19 71.98 0.66 -2.19 16 2 C -0.14 -3.06 4.26 30.59 0.13 -2.93 16 3 C 0.08 1.87 0.64 4.54 0.00 1.88 16 4 N -0.67 -17.96 5.80 -465.17 -2.70 -20.66 16 5 C 0.07 2.35 5.02 86.30 0.43 2.78 16 6 C -0.08 -3.51 5.45 30.59 0.17 -3.34 16 7 C 0.01 0.49 4.28 29.85 0.13 0.62 16 8 C -0.62 -36.27 9.11 25.60 0.23 -36.04 16 9 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 10 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 11 N -0.94 -59.41 13.65 21.45 0.29 -59.11 16 12 Si 1.12 50.90 29.90 68.60 2.05 52.96 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 16 C -0.14 -2.42 5.96 31.72 0.19 -2.23 16 17 C 0.04 0.79 7.64 72.60 0.55 1.35 16 18 O -0.39 -10.07 11.65 -148.98 -1.74 -11.81 16 19 C 0.05 1.41 5.56 72.49 0.40 1.82 16 20 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.13 6.92 -2.39 -0.02 1.12 16 22 H 0.04 0.94 7.03 -2.39 -0.02 0.92 16 23 H 0.05 1.26 6.91 -2.39 -0.02 1.25 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.35 8.56 7.21 -89.69 -0.65 7.91 16 26 H 0.03 0.94 6.77 -2.39 -0.02 0.93 16 27 H 0.06 2.10 6.85 -2.39 -0.02 2.09 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H -0.01 -0.70 8.01 -2.38 -0.02 -0.72 16 31 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 32 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 33 H 0.09 1.55 7.97 -2.39 -0.02 1.53 16 34 H 0.09 1.35 7.00 -2.39 -0.02 1.33 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 2.22 7.86 -2.39 -0.02 2.20 16 38 H 0.06 1.66 7.81 -2.39 -0.02 1.64 16 Total: -1.00 -66.53 297.08 1.75 -64.78 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.47 Total: 14.08 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 3.37 Total: -40.23 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.41 Total: -79.77 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.74 Total: -11.81 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.96 kcal Total: -66.53 1.75 -64.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379630947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.023 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds