Wall clock time and date at job start Sun Mar 29 2020 21:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 119.99762 * 2 1 4 4 H 1.08001 * 119.99967 * 202.40984 * 3 2 1 5 5 C 1.38952 * 120.00015 * 22.40772 * 3 2 1 6 6 N 1.31414 * 119.99484 * 11.60844 * 5 3 2 7 7 Si 1.86792 * 119.99860 * 191.60645 * 5 3 2 8 8 H 1.48495 * 109.47509 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47085 * 120.00248 * 7 5 3 10 10 H 1.48500 * 109.47149 * 240.00078 * 7 5 3 11 11 C 1.34774 * 120.00336 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00430 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99740 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.46931 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47094 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.82774 * 308.64372 * 15 14 13 17 17 C 1.54812 * 110.90614 * 185.00016 * 15 14 13 18 18 C 1.54103 * 104.30106 * 220.98300 * 17 15 14 19 19 O 1.43745 * 107.29707 * 357.90605 * 18 17 15 20 20 C 1.44387 * 106.97391 * 26.51008 * 19 18 17 21 21 H 1.08999 * 109.46948 * 272.14814 * 1 2 3 22 22 H 1.08990 * 109.47565 * 32.15107 * 1 2 3 23 23 H 1.09004 * 109.47135 * 152.15538 * 1 2 3 24 24 H 0.96999 * 119.99051 * 180.02562 * 6 5 3 25 25 H 1.08993 * 109.47453 * 60.00468 * 13 11 2 26 26 H 1.09004 * 109.46927 * 299.99812 * 13 11 2 27 27 H 1.08999 * 109.47172 * 59.99429 * 14 13 11 28 28 H 1.08997 * 109.47178 * 299.99655 * 14 13 11 29 29 H 1.09001 * 110.49000 * 102.24564 * 17 15 14 30 30 H 1.08998 * 110.48696 * 339.72467 * 17 15 14 31 31 H 1.08997 * 109.87559 * 117.32778 * 18 17 15 32 32 H 1.08997 * 109.87895 * 238.47734 * 18 17 15 33 33 H 1.08997 * 110.61276 * 78.44045 * 20 19 18 34 34 H 1.09000 * 110.61567 * 201.28179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1693 1.2227 -0.3566 5 6 1.5343 2.3453 0.4587 6 7 0.3896 2.2706 1.0998 7 14 2.3333 4.0078 0.1641 8 1 3.6072 3.8208 -0.5756 9 1 1.4183 4.8620 -0.6348 10 1 2.6091 4.6625 1.4682 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6352 -0.0005 15 6 1.6148 -4.9602 -0.0012 16 1 0.8698 -4.9780 0.7943 17 6 2.5863 -6.1590 0.1249 18 6 2.0259 -7.2078 -0.8553 19 8 0.8268 -6.6598 -1.4281 20 6 0.9564 -5.2225 -1.3822 21 1 -0.3633 0.0385 1.0269 22 1 -0.3634 0.8700 -0.5468 23 1 -0.3633 -0.9087 -0.4800 24 1 -0.0406 3.0789 1.4197 25 1 0.7585 -2.5299 -0.8902 26 1 0.7591 -2.5302 0.8898 27 1 3.0065 -3.5774 0.8894 28 1 3.0063 -3.5775 -0.8905 29 1 2.5822 -6.5480 1.1431 30 1 3.5947 -5.8651 -0.1663 31 1 2.7544 -7.4071 -1.6412 32 1 1.7937 -8.1285 -0.3201 33 1 1.6020 -4.8695 -2.1864 34 1 -0.0225 -4.7467 -1.4405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401276740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:34 Heat of formation + Delta-G solvation = -109.711039 kcal Electronic energy + Delta-G solvation = -15877.370397 eV Core-core repulsion = 13195.210668 eV Total energy + Delta-G solvation = -2682.159729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66863 -40.01885 -36.75748 -35.33016 -33.63688 -31.73190 -29.61345 -28.12146 -26.58481 -24.91144 -23.17832 -21.32456 -20.44729 -18.87964 -17.85983 -17.44897 -16.69974 -16.62981 -16.17824 -15.94428 -15.80648 -14.90712 -14.41084 -14.18363 -13.77542 -13.50399 -13.34197 -13.06816 -12.98273 -12.66680 -12.45146 -12.32435 -12.19356 -12.11724 -11.84501 -11.56308 -11.35829 -11.02279 -10.60302 -10.31772 -9.68156 -8.32786 -5.98322 1.35458 1.40241 1.54184 2.05552 2.28062 2.97805 3.10066 3.17286 3.62114 3.83576 3.95629 4.12182 4.19198 4.34591 4.37583 4.48454 4.59262 4.71310 4.80642 4.86846 4.91107 4.92639 5.05634 5.09605 5.14499 5.28497 5.41132 5.42348 5.44609 5.94257 6.10612 6.49572 7.18064 7.50239 8.05927 8.69007 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.066272 B = 0.005197 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.398716 B = 5386.564140 C = 5606.013417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.468 5.468 3 C -0.345 4.345 4 H 0.069 0.931 5 C -0.003 4.003 6 N -0.898 5.898 7 Si 0.989 3.011 8 H -0.275 1.275 9 H -0.265 1.265 10 H -0.275 1.275 11 C 0.432 3.568 12 O -0.638 6.638 13 C -0.118 4.118 14 C -0.078 4.078 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.152 4.152 18 C 0.043 3.957 19 O -0.402 6.402 20 C 0.047 3.953 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.273 0.727 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -13.103 -2.251 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.187 5.187 3 C -0.474 4.474 4 H 0.087 0.913 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.813 3.187 8 H -0.200 1.200 9 H -0.190 1.190 10 H -0.201 1.201 11 C 0.223 3.777 12 O -0.526 6.526 13 C -0.158 4.158 14 C -0.116 4.116 15 C -0.133 4.133 16 H 0.113 0.887 17 C -0.190 4.190 18 C -0.033 4.033 19 O -0.321 6.321 20 C -0.029 4.029 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.349 -13.073 -2.252 13.472 hybrid contribution 0.608 1.283 0.134 1.426 sum -1.740 -11.791 -2.118 12.105 Atomic orbital electron populations 1.21451 0.79249 1.00226 1.01163 1.43939 1.06879 1.04845 1.63053 1.19654 0.99142 0.86096 1.42472 0.91318 1.26075 0.97015 1.02822 0.94575 1.70080 1.17916 1.30284 1.35442 0.84944 0.78281 0.77297 0.78223 1.19956 1.18970 1.20067 1.21295 0.88046 0.86665 0.81734 1.90460 1.16405 1.88243 1.57522 1.21556 0.98963 0.90636 1.04610 1.21122 0.96739 0.91634 1.02150 1.22751 0.98005 0.93814 0.98730 0.88686 1.23009 0.99684 0.94899 1.01378 1.23295 0.86769 0.97467 0.95761 1.88820 1.40134 1.20008 1.83144 1.23798 1.02090 0.80951 0.96092 0.93597 0.93136 0.90952 0.91754 0.88009 0.88548 0.92672 0.92644 0.89169 0.90616 0.91939 0.88451 0.92259 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.35 8.52 127.77 1.09 6.44 16 2 N -0.47 -24.47 3.02 -658.90 -1.99 -26.46 16 3 C -0.35 -20.04 9.29 84.04 0.78 -19.26 16 4 H 0.07 4.28 7.41 -2.91 -0.02 4.26 16 5 C 0.00 -0.19 5.11 84.93 0.43 0.25 16 6 N -0.90 -48.01 10.62 21.66 0.23 -47.78 16 7 Si 0.99 42.99 29.57 68.60 2.03 45.02 16 8 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 11 C 0.43 21.16 7.63 87.66 0.67 21.83 16 12 O -0.64 -36.48 15.67 -3.06 -0.05 -36.53 16 13 C -0.12 -3.97 4.12 29.85 0.12 -3.85 16 14 C -0.08 -2.37 3.90 30.60 0.12 -2.25 16 15 C -0.11 -2.60 3.10 -9.41 -0.03 -2.63 16 16 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.15 -2.98 6.59 31.59 0.21 -2.77 16 18 C 0.04 0.83 7.70 72.36 0.56 1.38 16 19 O -0.40 -9.81 11.52 -148.98 -1.72 -11.52 16 20 C 0.05 1.06 6.65 72.74 0.48 1.54 16 21 H 0.05 2.09 7.54 -2.39 -0.02 2.07 16 22 H 0.05 2.35 7.06 -2.39 -0.02 2.34 16 23 H 0.07 2.45 6.36 -2.38 -0.02 2.44 16 24 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 25 H 0.10 2.90 7.00 -2.39 -0.02 2.89 16 26 H 0.10 2.94 8.11 -2.38 -0.02 2.92 16 27 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 28 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.52 7.86 -2.39 -0.02 1.51 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.72 278.66 4.01 -64.71 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.07 Total: 11.86 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 4.43 Total: 0.69 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.76 Total: -74.23 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -1.76 Total: -48.05 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.72 4.01 -64.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401276740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.999 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds