Wall clock time and date at job start Sun Mar 29 2020 21:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42890 * 109.47167 * 2 1 4 4 C 1.42904 * 114.00063 * 185.20190 * 3 2 1 5 5 C 1.50699 * 110.43556 * 57.77683 * 4 3 2 6 6 O 1.21289 * 120.00001 * 213.77870 * 5 4 3 7 7 N 1.34779 * 119.99609 * 33.77795 * 5 4 3 8 8 C 1.37102 * 119.99595 * 175.07311 * 7 5 4 9 9 H 1.07990 * 120.00064 * 359.97438 * 8 7 5 10 10 C 1.38946 * 119.99628 * 179.97438 * 8 7 5 11 11 N 1.31415 * 120.00127 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99902 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47228 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47379 * 120.00062 * 12 10 8 15 15 H 1.48498 * 109.46945 * 240.00082 * 12 10 8 16 16 C 1.54892 * 110.48719 * 180.46354 * 4 3 2 17 17 C 1.54895 * 102.74678 * 80.73457 * 16 4 3 18 18 C 1.54263 * 104.19687 * 37.94302 * 17 16 4 19 19 C 1.53875 * 106.60017 * 336.38994 * 18 17 16 20 20 H 1.09004 * 109.46799 * 59.99875 * 1 2 3 21 21 H 1.09004 * 109.47091 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47081 * 299.99432 * 1 2 3 23 23 H 1.09002 * 109.47164 * 240.00080 * 2 1 3 24 24 H 1.08999 * 109.46927 * 120.00600 * 2 1 3 25 25 H 0.96999 * 120.00060 * 355.06704 * 7 5 4 26 26 H 0.97000 * 119.99789 * 179.97438 * 11 10 8 27 27 H 1.08997 * 110.75402 * 322.42128 * 16 4 3 28 28 H 1.09002 * 110.75364 * 199.04779 * 16 4 3 29 29 H 1.08994 * 110.48869 * 279.26064 * 17 16 4 30 30 H 1.09006 * 110.48285 * 156.61877 * 17 16 4 31 31 H 1.09003 * 110.03102 * 95.67227 * 18 17 16 32 32 H 1.08995 * 110.03388 * 217.10320 * 18 17 16 33 33 H 1.08995 * 110.03312 * 119.28425 * 19 18 17 34 34 H 1.09001 * 110.03101 * 240.71605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4259 1.4618 -0.1184 5 6 3.9047 0.7899 -1.3794 6 8 4.9844 0.2377 -1.4000 7 7 3.1331 0.8027 -2.4844 8 6 3.6096 0.2808 -3.6593 9 1 4.6033 -0.1401 -3.6993 10 6 2.8140 0.2935 -4.7983 11 7 1.6046 0.8053 -4.7493 12 14 3.4634 -0.4169 -6.3992 13 1 4.8425 -0.9268 -6.1911 14 1 2.5848 -1.5302 -6.8393 15 1 3.4796 0.6420 -7.4401 16 6 3.8531 2.9505 -0.0981 17 6 3.8429 3.2884 1.4135 18 6 4.3867 2.0131 2.0900 19 6 4.1216 0.8517 1.1160 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.2407 1.1811 -2.4485 26 1 1.0493 0.8145 -5.5446 27 1 3.1328 3.5664 -0.6365 28 1 4.8534 3.0710 -0.5141 29 1 2.8276 3.4960 1.7512 30 1 4.4953 4.1371 1.6191 31 1 5.4572 2.1131 2.2693 32 1 3.8649 1.8380 3.0308 33 1 5.0634 0.3881 0.8227 34 1 3.4711 0.1129 1.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586762950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:54 Heat of formation + Delta-G solvation = -99.836368 kcal Electronic energy + Delta-G solvation = -16721.969362 eV Core-core repulsion = 14040.237831 eV Total energy + Delta-G solvation = -2681.731531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71320 -36.88448 -35.59964 -33.89126 -31.23914 -30.71138 -28.42038 -27.73503 -24.93397 -22.47539 -21.27089 -20.16753 -18.72543 -17.93035 -16.95789 -15.61725 -15.02388 -14.65151 -14.60004 -14.20984 -13.90228 -13.35085 -12.94129 -12.52847 -12.25388 -12.05718 -11.60021 -11.33131 -11.19254 -11.13666 -10.93717 -10.87001 -10.69961 -10.39748 -10.35619 -10.21544 -10.08176 -9.56867 -9.32153 -8.14341 -7.98016 -6.43685 -3.84761 3.13415 3.25071 3.32225 3.77729 4.03261 4.17898 4.84957 4.93382 4.99915 5.28842 5.35518 5.45860 5.62106 5.75651 5.82911 5.84264 5.94219 5.98622 6.03690 6.18432 6.20810 6.23642 6.34494 6.40813 6.49273 6.56171 6.62820 6.64976 7.52503 7.62944 8.05339 8.59677 9.14108 9.53284 10.03226 10.72865 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031428 B = 0.008701 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.721064 B = 3217.126822 C = 3649.165023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.106 3.894 5 C 0.420 3.580 6 O -0.594 6.594 7 N -0.548 5.548 8 C -0.304 4.304 9 H 0.103 0.897 10 C 0.025 3.975 11 N -0.893 5.893 12 Si 0.929 3.071 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.141 4.141 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.399 0.601 26 H 0.272 0.728 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 2.270 9.666 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.290 6.290 4 C 0.063 3.937 5 C 0.205 3.795 6 O -0.480 6.480 7 N -0.183 5.183 8 C -0.434 4.434 9 H 0.121 0.879 10 C -0.178 4.178 11 N -0.534 5.534 12 Si 0.756 3.244 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.179 4.179 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.233 0.767 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.794 2.086 9.493 9.752 hybrid contribution -0.179 -0.397 -0.892 0.993 sum -0.973 1.690 8.601 8.819 Atomic orbital electron populations 1.21694 0.93944 1.01848 1.02790 1.22551 0.95148 0.84374 1.00802 1.87862 1.20332 1.26450 1.94333 1.22457 0.80992 0.96795 0.93452 1.20256 0.87081 0.86537 0.85634 1.90495 1.23692 1.49293 1.84550 1.41988 1.16365 1.51868 1.08101 1.19808 1.01646 1.36011 0.85944 0.87883 1.25304 0.95352 0.97334 0.99774 1.69646 1.08448 1.44670 1.30603 0.85811 0.79087 0.78509 0.81009 1.19196 1.20671 1.20657 1.22423 1.01869 0.92745 0.96865 1.22330 1.01089 0.97222 0.95000 1.22059 1.00518 0.94831 0.98103 1.22622 1.02390 0.98122 0.94750 0.91406 0.91573 0.92510 0.92002 0.93836 0.76677 0.91805 0.90354 0.89843 0.91300 0.91843 0.91998 0.92233 0.89041 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 37.16 0.38 -1.80 16 2 C 0.05 0.86 5.87 37.16 0.22 1.07 16 3 O -0.37 -7.11 9.40 -35.23 -0.33 -7.44 16 4 C 0.11 2.09 0.82 -90.11 -0.07 2.02 16 5 C 0.42 10.36 5.57 -10.98 -0.06 10.30 16 6 O -0.59 -16.46 15.18 5.55 0.08 -16.38 16 7 N -0.55 -14.41 4.38 -10.97 -0.05 -14.46 16 8 C -0.30 -8.60 9.68 -14.93 -0.14 -8.75 16 9 H 0.10 3.04 7.17 -52.49 -0.38 2.67 16 10 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 11 N -0.89 -24.45 13.05 55.50 0.72 -23.73 16 12 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C -0.10 -1.75 6.04 -24.73 -0.15 -1.90 16 17 C -0.12 -1.66 6.81 -25.07 -0.17 -1.83 16 18 C -0.12 -1.65 6.80 -25.61 -0.17 -1.83 16 19 C -0.14 -2.46 5.89 -25.61 -0.15 -2.61 16 20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.30 6.34 -51.93 -0.33 0.97 16 24 H 0.04 0.71 6.46 -51.93 -0.34 0.37 16 25 H 0.40 10.38 7.09 -40.82 -0.29 10.09 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.08 1.48 8.05 -51.93 -0.42 1.07 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.77 6.79 -51.93 -0.35 1.42 16 34 H 0.07 1.08 6.16 -51.93 -0.32 0.76 16 LS Contribution 277.64 15.07 4.18 4.18 Total: -1.00 -30.22 277.64 -5.77 -35.99 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -4.94 Total: 10.56 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.42 Total: -4.76 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.68 Total: -38.19 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.25 Total: -23.82 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.22 -5.77 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586762950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.850 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds