Wall clock time and date at job start Sun Mar 29 2020 21:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42890 * 109.47167 * 2 1 4 4 C 1.42904 * 114.00063 * 185.20190 * 3 2 1 5 5 C 1.50699 * 110.43556 * 57.77683 * 4 3 2 6 6 O 1.21289 * 120.00001 * 213.77870 * 5 4 3 7 7 N 1.34779 * 119.99609 * 33.77795 * 5 4 3 8 8 C 1.37102 * 119.99595 * 175.07311 * 7 5 4 9 9 H 1.07990 * 120.00064 * 359.97438 * 8 7 5 10 10 C 1.38946 * 119.99628 * 179.97438 * 8 7 5 11 11 N 1.31415 * 120.00127 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99902 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47228 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47379 * 120.00062 * 12 10 8 15 15 H 1.48498 * 109.46945 * 240.00082 * 12 10 8 16 16 C 1.54892 * 110.48719 * 180.46354 * 4 3 2 17 17 C 1.54895 * 102.74678 * 80.73457 * 16 4 3 18 18 C 1.54263 * 104.19687 * 37.94302 * 17 16 4 19 19 C 1.53875 * 106.60017 * 336.38994 * 18 17 16 20 20 H 1.09004 * 109.46799 * 59.99875 * 1 2 3 21 21 H 1.09004 * 109.47091 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47081 * 299.99432 * 1 2 3 23 23 H 1.09002 * 109.47164 * 240.00080 * 2 1 3 24 24 H 1.08999 * 109.46927 * 120.00600 * 2 1 3 25 25 H 0.96999 * 120.00060 * 355.06704 * 7 5 4 26 26 H 0.97000 * 119.99789 * 179.97438 * 11 10 8 27 27 H 1.08997 * 110.75402 * 322.42128 * 16 4 3 28 28 H 1.09002 * 110.75364 * 199.04779 * 16 4 3 29 29 H 1.08994 * 110.48869 * 279.26064 * 17 16 4 30 30 H 1.09006 * 110.48285 * 156.61877 * 17 16 4 31 31 H 1.09003 * 110.03102 * 95.67227 * 18 17 16 32 32 H 1.08995 * 110.03388 * 217.10320 * 18 17 16 33 33 H 1.08995 * 110.03312 * 119.28425 * 19 18 17 34 34 H 1.09001 * 110.03101 * 240.71605 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4259 1.4618 -0.1184 5 6 3.9047 0.7899 -1.3794 6 8 4.9844 0.2377 -1.4000 7 7 3.1331 0.8027 -2.4844 8 6 3.6096 0.2808 -3.6593 9 1 4.6033 -0.1401 -3.6993 10 6 2.8140 0.2935 -4.7983 11 7 1.6046 0.8053 -4.7493 12 14 3.4634 -0.4169 -6.3992 13 1 4.8425 -0.9268 -6.1911 14 1 2.5848 -1.5302 -6.8393 15 1 3.4796 0.6420 -7.4401 16 6 3.8531 2.9505 -0.0981 17 6 3.8429 3.2884 1.4135 18 6 4.3867 2.0131 2.0900 19 6 4.1216 0.8517 1.1160 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.2407 1.1811 -2.4485 26 1 1.0493 0.8145 -5.5446 27 1 3.1328 3.5664 -0.6365 28 1 4.8534 3.0710 -0.5141 29 1 2.8276 3.4960 1.7512 30 1 4.4953 4.1371 1.6191 31 1 5.4572 2.1131 2.2693 32 1 3.8649 1.8380 3.0308 33 1 5.0634 0.3881 0.8227 34 1 3.4711 0.1129 1.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586762950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:54 Heat of formation + Delta-G solvation = -120.002044 kcal Electronic energy + Delta-G solvation = -16722.843812 eV Core-core repulsion = 14040.237831 eV Total energy + Delta-G solvation = -2682.605980 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38249 -38.71823 -37.01478 -35.92315 -33.29842 -32.08967 -29.74404 -29.24065 -26.93007 -23.83621 -22.98885 -21.41452 -20.52817 -19.86045 -18.73593 -17.17504 -16.86972 -16.16750 -15.95263 -15.85711 -15.66500 -15.26408 -14.64625 -13.97661 -13.68709 -13.50027 -13.26390 -13.00053 -12.72020 -12.64691 -12.46969 -12.29402 -12.15874 -12.09468 -11.95681 -11.84375 -11.57928 -11.26125 -10.89945 -10.08563 -10.04045 -8.52038 -6.02781 1.31287 1.38140 1.52947 1.87358 2.24256 2.57006 3.10297 3.12144 3.60418 3.71534 4.05570 4.11126 4.29786 4.35933 4.42771 4.50645 4.54101 4.59984 4.78080 4.81763 4.89661 5.03687 5.06969 5.11801 5.20865 5.25691 5.29832 5.34566 5.48964 5.86018 6.15481 6.52869 7.03414 7.46451 7.98973 8.64589 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031428 B = 0.008701 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.721064 B = 3217.126822 C = 3649.165023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 O -0.370 6.370 4 C 0.106 3.894 5 C 0.416 3.584 6 O -0.631 6.631 7 N -0.555 5.555 8 C -0.342 4.342 9 H 0.080 0.920 10 C -0.010 4.010 11 N -0.913 5.913 12 Si 0.996 3.004 13 H -0.273 1.273 14 H -0.268 1.268 15 H -0.268 1.268 16 C -0.106 4.106 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.140 4.140 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.023 0.977 24 H 0.062 0.938 25 H 0.397 0.603 26 H 0.280 0.720 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 2.860 10.763 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.033 4.033 3 O -0.289 6.289 4 C 0.063 3.937 5 C 0.203 3.797 6 O -0.520 6.520 7 N -0.190 5.190 8 C -0.472 4.472 9 H 0.098 0.902 10 C -0.210 4.210 11 N -0.553 5.553 12 Si 0.819 3.181 13 H -0.197 1.197 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.144 4.144 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.178 4.178 20 H 0.069 0.931 21 H 0.104 0.896 22 H 0.098 0.902 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.232 0.768 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.506 2.690 10.603 11.042 hybrid contribution 0.024 -0.609 -1.227 1.370 sum -1.483 2.081 9.376 9.718 Atomic orbital electron populations 1.21684 0.91502 1.03300 1.03030 1.22679 0.97123 0.83676 0.99793 1.87869 1.19781 1.27203 1.94092 1.22517 0.81583 0.98082 0.91536 1.21283 0.86280 0.85349 0.86799 1.90454 1.25322 1.50709 1.85524 1.42034 1.16444 1.52226 1.08334 1.19782 1.01450 1.38240 0.87687 0.90238 1.26139 0.95394 0.96972 1.02521 1.69709 1.09101 1.44574 1.31880 0.84838 0.78242 0.78256 0.76782 1.19733 1.19309 1.19279 1.22496 1.01011 0.90884 0.99971 1.22315 1.02469 0.98080 0.91595 1.22070 1.01814 0.92992 0.97977 1.22620 1.00894 0.99745 0.94523 0.93101 0.89582 0.90213 0.95865 0.91952 0.76809 0.91042 0.90590 0.90971 0.90258 0.89115 0.90785 0.89619 0.91608 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 10.28 71.98 0.74 -3.21 16 2 C 0.04 1.55 5.87 71.98 0.42 1.97 16 3 O -0.37 -13.99 9.40 -148.98 -1.40 -15.39 16 4 C 0.11 4.18 0.82 -10.46 -0.01 4.17 16 5 C 0.42 21.32 5.57 87.66 0.49 21.81 16 6 O -0.63 -36.65 15.18 -3.06 -0.05 -36.70 16 7 N -0.56 -30.44 4.38 -306.99 -1.34 -31.78 16 8 C -0.34 -20.11 9.68 84.04 0.81 -19.29 16 9 H 0.08 4.95 7.17 -2.92 -0.02 4.93 16 10 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 11 N -0.91 -50.29 13.05 21.66 0.28 -50.01 16 12 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 C -0.11 -3.59 6.04 31.89 0.19 -3.39 16 17 C -0.11 -2.65 6.81 31.67 0.22 -2.44 16 18 C -0.11 -2.78 6.80 31.32 0.21 -2.57 16 19 C -0.14 -4.75 5.89 31.32 0.18 -4.56 16 20 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.02 1.00 6.34 -2.39 -0.02 0.99 16 24 H 0.06 1.96 6.46 -2.39 -0.02 1.94 16 25 H 0.40 21.51 7.09 -92.71 -0.66 20.86 16 26 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 2.58 8.05 -2.39 -0.02 2.56 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 2.58 6.79 -2.39 -0.02 2.56 16 34 H 0.07 2.35 6.16 -2.39 -0.01 2.34 16 Total: -1.00 -66.99 277.64 3.68 -63.31 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.44 Total: 32.72 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 3.73 Total: -7.57 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.06 Total: -81.79 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -1.45 Total: -52.09 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.99 3.68 -63.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586762950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.691 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds