Wall clock time and date at job start Sun Mar 29 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46681 * 2 1 4 4 C 1.42898 * 113.99820 * 179.97438 * 3 2 1 5 5 C 1.53494 * 114.20650 * 210.00063 * 4 3 2 6 6 N 1.47060 * 87.98736 * 220.14676 * 5 4 3 7 7 C 1.34777 * 136.06113 * 207.08340 * 6 5 4 8 8 O 1.21282 * 119.99620 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.47067 * 87.88502 * 27.34580 * 6 5 4 20 20 H 1.08999 * 109.47708 * 299.99576 * 1 2 3 21 21 H 1.09003 * 109.47218 * 60.00466 * 1 2 3 22 22 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47014 * 240.00606 * 2 1 3 24 24 H 1.08993 * 109.47080 * 120.00052 * 2 1 3 25 25 H 1.09000 * 113.28061 * 343.07103 * 4 3 2 26 26 H 1.09006 * 113.46581 * 105.36518 * 5 4 3 27 27 H 1.08998 * 113.46890 * 334.93225 * 5 4 3 28 28 H 1.09002 * 109.47120 * 59.99760 * 9 7 6 29 29 H 1.08998 * 109.46862 * 300.00562 * 9 7 6 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 33 33 H 1.08992 * 113.47187 * 87.43374 * 19 6 5 34 34 H 1.09004 * 113.46730 * 217.88356 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.9621 2.7187 0.7006 6 7 4.9602 2.8318 -0.3735 7 6 6.1972 3.3522 -0.4980 8 8 6.7266 3.8912 0.4508 9 6 6.9221 3.2654 -1.8163 10 6 8.2958 3.9266 -1.6875 11 6 9.0209 3.8392 -3.0058 12 1 8.5489 3.3604 -3.8510 13 6 10.2864 4.3715 -3.1330 14 7 10.8609 4.9550 -2.1039 15 14 11.1849 4.2638 -4.7672 16 1 10.8684 5.4616 -5.5859 17 1 12.6486 4.2029 -4.5243 18 1 10.7519 3.0413 -5.4905 19 6 4.0118 2.1331 -1.2540 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.9358 0.5395 0.2925 26 1 4.3984 2.5194 1.6795 27 1 3.2469 3.5411 0.7170 28 1 6.3423 3.7778 -2.5841 29 1 7.0475 2.2188 -2.0937 30 1 8.8753 3.4138 -0.9198 31 1 8.1707 4.9732 -1.4099 32 1 11.7514 5.3291 -2.1934 33 1 3.3097 2.8009 -1.7529 34 1 4.4906 1.4347 -1.9404 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590531695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:58 Heat of formation + Delta-G solvation = -78.613549 kcal Electronic energy + Delta-G solvation = -15286.633636 eV Core-core repulsion = 12605.822396 eV Total energy + Delta-G solvation = -2680.811240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48180 -39.52174 -37.60961 -35.59468 -33.14146 -32.11413 -30.04014 -27.57863 -26.86114 -23.97571 -23.59526 -22.30913 -19.92579 -18.83628 -18.25059 -17.68458 -16.94209 -16.52373 -16.48016 -16.09280 -15.42564 -15.00398 -14.45166 -14.17789 -14.06239 -13.72702 -13.30814 -13.09045 -13.06733 -12.82479 -12.73676 -12.47693 -12.06155 -11.97442 -11.85047 -11.67238 -11.33151 -10.85888 -10.58334 -10.43012 -9.81079 -8.19174 -6.33859 1.41948 1.45235 1.55904 1.57113 1.70957 2.42375 2.78372 3.13740 3.24894 3.61795 3.89588 4.12011 4.26933 4.36926 4.42802 4.45590 4.51865 4.53699 4.58974 4.61679 4.75107 4.81039 5.01127 5.08809 5.11197 5.35135 5.47201 5.58511 5.82313 6.14819 6.23756 6.61907 6.84568 7.14046 7.36546 8.93752 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056664 B = 0.004326 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.022506 B = 6471.017107 C = 6872.779087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.382 6.382 4 C 0.073 3.927 5 C 0.090 3.910 6 N -0.654 5.654 7 C 0.541 3.459 8 O -0.590 6.590 9 C -0.108 4.108 10 C 0.042 3.958 11 C -0.544 4.544 12 H 0.077 0.923 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.977 3.023 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.254 1.254 19 C 0.084 3.916 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.104 0.896 30 H -0.016 1.016 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.102 0.898 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.022 -12.565 0.472 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.300 6.300 4 C 0.013 3.987 5 C -0.033 4.033 6 N -0.392 5.392 7 C 0.334 3.666 8 O -0.469 6.469 9 C -0.147 4.147 10 C 0.004 3.996 11 C -0.582 4.582 12 H 0.095 0.905 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.801 3.199 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.178 1.178 19 C -0.038 4.038 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.138 0.862 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.002 0.998 31 H 0.000 1.000 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.523 -11.963 1.005 23.777 hybrid contribution 0.979 0.350 -0.224 1.063 sum -19.544 -11.613 0.781 22.748 Atomic orbital electron populations 1.21777 0.92935 1.03382 1.02739 1.22812 0.96279 0.82393 1.01470 1.87918 1.19078 1.28644 1.94348 1.23746 0.81972 0.97653 0.95285 1.23337 0.88645 0.98243 0.93071 1.49398 1.13313 1.58793 1.17673 1.20980 0.79403 0.75408 0.90856 1.90660 1.67519 1.45673 1.43095 1.21561 0.96659 1.03851 0.92658 1.18712 0.91075 0.93957 0.95837 1.21687 1.01280 1.37687 0.97505 0.90502 1.26175 0.98727 0.94574 1.01048 1.70184 1.15640 1.39129 1.32858 0.85273 0.77027 0.79302 0.78347 1.19695 1.21120 1.17753 1.23792 0.89393 0.95174 0.95466 0.92388 0.92156 0.89237 0.91763 0.92175 0.86188 0.90699 0.88806 0.88100 0.87748 0.99782 1.00024 0.92786 0.87985 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.54 6.50 71.98 0.47 1.01 16 3 O -0.38 -6.57 10.40 -148.98 -1.55 -8.12 16 4 C 0.07 1.30 4.68 31.02 0.15 1.44 16 5 C 0.09 2.20 8.45 83.18 0.70 2.90 16 6 N -0.65 -20.02 3.69 -858.42 -3.16 -23.19 16 7 C 0.54 22.82 8.08 87.66 0.71 23.52 16 8 O -0.59 -31.12 16.76 -3.04 -0.05 -31.18 16 9 C -0.11 -4.56 5.47 29.85 0.16 -4.40 16 10 C 0.04 2.40 4.26 29.85 0.13 2.53 16 11 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 12 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 13 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 14 N -0.94 -60.26 13.29 21.45 0.28 -59.97 16 15 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 19 C 0.08 1.69 8.28 83.26 0.69 2.38 16 20 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 21 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 22 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.12 1.77 7.88 -2.39 -0.02 1.75 16 26 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 29 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 30 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 31 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 32 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -78.23 295.24 3.04 -75.19 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.06 Total: 3.23 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.44 Total: -2.54 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.88 Total: -83.16 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.60 Total: -39.30 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -78.23 3.04 -75.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590531695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.421 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds