Wall clock time and date at job start Sun Mar 29 2020 22:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99588 * 2 1 4 4 H 1.48494 * 109.47399 * 270.00260 * 3 2 1 5 5 H 1.48500 * 109.47096 * 30.00421 * 3 2 1 6 6 H 1.48497 * 109.47090 * 149.99876 * 3 2 1 7 7 C 1.37873 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99955 * 0.02562 * 7 2 1 9 9 C 1.50709 * 120.00070 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46681 * 180.02562 * 9 7 2 11 11 C 1.48001 * 111.00222 * 293.95585 * 10 9 7 12 12 C 1.50447 * 112.82569 * 191.34712 * 11 10 9 13 13 C 1.54308 * 108.49739 * 93.72476 * 12 11 10 14 14 C 1.45879 * 112.19063 * 281.46520 * 13 12 11 15 15 H 1.09001 * 108.93574 * 300.51120 * 14 13 12 16 16 C 1.53006 * 108.93783 * 181.81737 * 14 13 12 17 17 C 1.52997 * 109.47127 * 65.00073 * 16 14 13 18 18 O 1.42895 * 109.47269 * 179.97438 * 17 16 14 19 19 C 1.54306 * 112.18692 * 61.11992 * 14 13 12 20 20 C 1.48005 * 110.99485 * 165.23789 * 10 9 7 21 21 H 0.96992 * 120.00378 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46626 * 60.00417 * 9 7 2 23 23 H 1.09000 * 109.47075 * 300.00449 * 9 7 2 24 24 H 1.08992 * 108.81321 * 70.48532 * 11 10 9 25 25 H 1.09001 * 108.81013 * 312.20438 * 11 10 9 26 26 H 1.09001 * 109.63237 * 334.02615 * 12 11 10 27 27 H 1.08996 * 109.63472 * 213.42687 * 12 11 10 28 28 H 1.09003 * 108.93619 * 160.76176 * 13 12 11 29 29 H 1.09005 * 108.87011 * 42.11408 * 13 12 11 30 30 H 1.09001 * 109.47002 * 184.99647 * 16 14 13 31 31 H 1.08993 * 109.46955 * 305.00084 * 16 14 13 32 32 H 1.09001 * 109.47289 * 299.99953 * 17 16 14 33 33 H 1.09004 * 109.47261 * 59.99697 * 17 16 14 34 34 H 0.96700 * 114.00516 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.63201 * 41.16553 * 19 14 13 36 36 H 1.09000 * 109.63510 * 161.76010 * 19 14 13 37 37 H 1.09005 * 108.80717 * 205.69903 * 20 10 9 38 38 H 1.09000 * 108.81319 * 323.96870 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5117 -1.1938 -0.0011 10 7 4.0014 -2.5788 -0.0022 11 6 3.6498 -3.2667 1.2601 12 6 4.3557 -4.5854 1.4224 13 6 5.6471 -4.3527 2.2343 14 6 6.7170 -3.7893 1.4182 15 1 6.9357 -4.4748 0.5994 16 6 7.9701 -3.6322 2.2819 17 6 8.4672 -5.0127 2.7153 18 8 9.6379 -4.8661 3.5215 19 6 6.3385 -2.4139 0.8299 20 6 5.4378 -2.6331 -0.3549 21 1 -0.4850 0.8399 0.0004 22 1 3.8753 -0.6802 0.8889 23 1 3.8746 -0.6797 -0.8911 24 1 2.5738 -3.4395 1.2783 25 1 3.9142 -2.6212 2.0976 26 1 4.6074 -4.9891 0.4417 27 1 3.7095 -5.2837 1.9542 28 1 5.9812 -5.3043 2.6479 29 1 5.4296 -3.6680 3.0541 30 1 8.7477 -3.1304 1.7060 31 1 7.7311 -3.0386 3.1642 32 1 7.6896 -5.5146 3.2912 33 1 8.7061 -5.6064 1.8329 34 1 10.0084 -5.7032 3.8330 35 1 5.8156 -1.8247 1.5833 36 1 7.2404 -1.8906 0.5125 37 1 5.6568 -3.6095 -0.7871 38 1 5.6457 -1.8663 -1.1012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591478557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:27 Heat of formation + Delta-G solvation = -85.861190 kcal Electronic energy + Delta-G solvation = -16458.692129 eV Core-core repulsion = 13913.399702 eV Total energy + Delta-G solvation = -2545.292427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60288 -38.02045 -36.33737 -34.55456 -33.31328 -31.44763 -29.21833 -26.62859 -25.85078 -23.49889 -22.90163 -21.01916 -20.39190 -19.01595 -18.31666 -16.91586 -16.60397 -16.34885 -16.03530 -15.32865 -15.05575 -14.74720 -14.44000 -14.28467 -14.10483 -13.74250 -13.16186 -12.99846 -12.88702 -12.61044 -12.35256 -12.23982 -12.05074 -11.87311 -11.65422 -11.50033 -11.35937 -11.21535 -11.07216 -10.78226 -10.69927 -8.82961 -8.29064 -6.32024 1.32682 1.34098 1.44871 2.33145 3.03679 3.19867 3.31700 3.72361 3.80392 4.04549 4.17767 4.28684 4.36322 4.40196 4.54486 4.59600 4.64729 4.72727 4.76325 4.84728 4.85852 5.01401 5.03794 5.08657 5.15243 5.17758 5.24662 5.31518 5.44072 5.45062 5.54251 5.57191 6.03576 6.46320 6.72697 6.76808 6.92925 7.32023 8.87771 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044920 B = 0.005895 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.179182 B = 4748.924627 C = 5043.610824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.516 4.516 8 H 0.036 0.964 9 C 0.177 3.823 10 N -0.556 5.556 11 C 0.080 3.920 12 C -0.112 4.112 13 C -0.114 4.114 14 C -0.071 4.071 15 H 0.086 0.914 16 C -0.114 4.114 17 C 0.074 3.926 18 O -0.599 6.599 19 C -0.139 4.139 20 C 0.057 3.943 21 H 0.267 0.733 22 H -0.019 1.019 23 H 0.026 0.974 24 H 0.038 0.962 25 H 0.012 0.988 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.557 -10.156 4.689 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.555 4.555 8 H 0.054 0.946 9 C 0.050 3.950 10 N -0.281 5.281 11 C -0.048 4.048 12 C -0.149 4.149 13 C -0.151 4.151 14 C -0.089 4.089 15 H 0.104 0.896 16 C -0.151 4.151 17 C -0.004 4.004 18 O -0.408 6.408 19 C -0.178 4.178 20 C -0.070 4.070 21 H 0.076 0.924 22 H -0.002 1.002 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.070 -9.672 4.225 20.926 hybrid contribution -0.042 0.897 0.711 1.146 sum 18.027 -8.775 4.937 20.648 Atomic orbital electron populations 1.70047 1.08078 1.28075 1.52765 1.25842 0.95599 1.03075 0.94410 0.85724 0.79192 0.78739 0.79348 1.18752 1.20620 1.17932 1.21328 0.91319 0.93191 1.49646 0.94553 1.19903 0.93980 0.86702 0.94428 1.61668 1.15258 1.16519 1.34681 1.21543 0.99047 0.95112 0.89077 1.21418 0.96764 0.95411 1.01331 1.20717 0.94579 1.01688 0.98090 1.20024 0.94219 0.96303 0.98362 0.89602 1.21599 0.96865 0.97139 0.99536 1.22323 0.86832 0.96960 0.94242 1.86425 1.45082 1.37593 1.71674 1.21953 0.99944 0.97677 0.98262 1.21981 0.85599 1.02467 0.96993 0.92433 1.00170 0.95628 0.94327 0.96995 0.90507 0.90324 0.89582 0.93469 0.91504 0.92854 0.92431 0.92202 0.75356 0.94130 0.90234 0.89839 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.48 13.96 21.45 0.30 -60.19 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.55 6.54 99.48 0.65 -10.90 16 7 C -0.52 -30.83 9.20 25.60 0.24 -30.60 16 8 H 0.04 2.42 7.36 -2.91 -0.02 2.39 16 9 C 0.18 8.80 3.71 85.56 0.32 9.12 16 10 N -0.56 -23.40 4.67 -904.81 -4.22 -27.63 16 11 C 0.08 3.10 4.60 85.27 0.39 3.49 16 12 C -0.11 -3.09 5.63 30.21 0.17 -2.92 16 13 C -0.11 -2.57 4.37 28.85 0.13 -2.45 16 14 C -0.07 -1.53 1.74 -12.53 -0.02 -1.55 16 15 H 0.09 1.63 7.50 -2.39 -0.02 1.61 16 16 C -0.11 -2.28 4.97 30.60 0.15 -2.13 16 17 C 0.07 1.18 6.75 71.98 0.49 1.67 16 18 O -0.60 -10.56 13.66 -148.98 -2.03 -12.60 16 19 C -0.14 -3.82 4.96 30.21 0.15 -3.67 16 20 C 0.06 1.82 5.15 85.26 0.44 2.26 16 21 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 22 H -0.02 -0.97 6.88 -2.39 -0.02 -0.99 16 23 H 0.03 1.25 7.10 -2.39 -0.02 1.23 16 24 H 0.04 1.75 7.17 -2.39 -0.02 1.73 16 25 H 0.01 0.48 6.37 -2.39 -0.02 0.47 16 26 H 0.08 2.06 7.08 -2.39 -0.02 2.05 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 1.50 6.20 -2.39 -0.01 1.48 16 29 H 0.05 1.21 7.51 -2.38 -0.02 1.19 16 30 H 0.07 1.36 7.97 -2.39 -0.02 1.34 16 31 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.06 0.82 6.45 -2.39 -0.02 0.80 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.40 3.09 9.12 -74.06 -0.68 2.42 16 35 H 0.04 1.33 6.84 -2.39 -0.02 1.31 16 36 H 0.08 1.91 7.88 -2.39 -0.02 1.89 16 37 H 0.08 2.32 6.58 -2.38 -0.02 2.30 16 38 H 0.06 1.92 7.56 -2.39 -0.02 1.90 16 Total: -1.00 -70.71 285.37 -0.86 -71.58 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.30 Total: 7.61 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 2.91 Total: -25.84 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.92 Total: -87.81 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -2.03 Total: -12.60 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -70.71 -0.86 -71.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591478557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.286 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds