Wall clock time and date at job start Sun Mar 29 2020 22:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47035 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47157 * 59.99991 * 12 11 10 14 14 O 1.42901 * 109.47147 * 300.00445 * 12 11 10 15 15 C 1.52998 * 109.47380 * 180.02562 * 12 11 10 16 16 C 1.52998 * 109.46818 * 300.00102 * 15 12 11 17 17 C 1.53007 * 109.47035 * 179.97438 * 16 15 12 18 18 C 1.53004 * 109.46939 * 59.99640 * 17 16 15 19 19 C 1.52995 * 109.47196 * 300.00047 * 18 17 16 20 20 C 1.52994 * 109.47374 * 179.97438 * 15 12 11 21 21 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 24 24 H 1.00902 * 111.00068 * 56.04268 * 10 9 7 25 25 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 26 26 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 27 27 H 0.96706 * 113.99785 * 299.99503 * 14 12 11 28 28 H 1.08996 * 109.46919 * 59.99709 * 15 12 11 29 29 H 1.08996 * 109.47054 * 299.99524 * 16 15 12 30 30 H 1.08997 * 109.47660 * 60.00066 * 16 15 12 31 31 H 1.09005 * 109.46901 * 299.99840 * 17 16 15 32 32 H 1.08999 * 109.47196 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.46837 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46665 * 60.00350 * 18 17 16 35 35 H 1.08993 * 109.47468 * 299.99913 * 19 18 17 36 36 H 1.08997 * 109.47038 * 179.97438 * 19 18 17 37 37 H 1.09007 * 109.47225 * 300.00412 * 20 15 12 38 38 H 1.09005 * 109.47157 * 59.99971 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5302 -6.0431 -0.0006 13 1 3.1558 -5.9686 0.8890 14 8 3.3487 -5.9455 -1.1679 15 6 1.8009 -7.3880 -0.0006 16 6 0.9242 -7.4927 1.2490 17 6 0.1943 -8.8375 1.2487 18 6 1.2189 -9.9738 1.2477 19 6 2.0954 -9.8691 -0.0019 20 6 2.8257 -8.5240 -0.0019 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.8406 -3.5487 0.7808 25 1 0.8808 -4.9812 0.8903 26 1 0.8801 -4.9818 -0.8897 27 1 2.8573 -6.0041 -1.9988 28 1 1.1756 -7.4622 -0.8903 29 1 1.5495 -7.4185 2.1387 30 1 0.1940 -6.6835 1.2495 31 1 -0.4310 -8.9112 0.3589 32 1 -0.4306 -8.9119 2.1387 33 1 0.6989 -10.9318 1.2470 34 1 1.8442 -9.9000 2.1374 35 1 1.4702 -9.9429 -0.8916 36 1 2.8256 -10.6783 -0.0024 37 1 3.4500 -8.4492 -0.8924 38 1 3.4513 -8.4500 0.8877 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:00 Heat of formation + Delta-G solvation = -87.246142 kcal Electronic energy + Delta-G solvation = -16026.293106 eV Core-core repulsion = 13480.940623 eV Total energy + Delta-G solvation = -2545.352483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27405 -36.58645 -34.57881 -32.42394 -31.41194 -30.75375 -27.91302 -25.39022 -23.07811 -22.36089 -21.23254 -20.77504 -19.84922 -16.67883 -16.07125 -15.59601 -15.10110 -14.70402 -14.33663 -14.11445 -14.03704 -13.53385 -12.95468 -12.89406 -12.31877 -12.27193 -12.02585 -11.51654 -11.26174 -11.20594 -11.19032 -10.83191 -10.75166 -10.65076 -10.44707 -10.42552 -10.00123 -9.97229 -9.41400 -9.02854 -8.45204 -7.20685 -6.01133 -4.02883 3.35801 3.39033 3.42925 4.41830 4.52014 4.57056 4.67773 4.86459 5.01094 5.21339 5.21451 5.34698 5.39437 5.45662 5.46545 5.51361 5.60687 5.66301 5.81148 5.88895 5.93834 6.00520 6.07796 6.10479 6.18680 6.23711 6.32531 6.38378 6.54572 7.25544 7.43193 7.80963 8.02785 8.15818 8.43145 8.65273 9.06637 9.62024 11.10059 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056649 B = 0.004635 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.153299 B = 6039.901762 C = 6368.570415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.681 5.681 11 C 0.027 3.973 12 C 0.115 3.885 13 H 0.090 0.910 14 O -0.548 6.548 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.109 4.109 21 H 0.261 0.739 22 H 0.026 0.974 23 H -0.016 1.016 24 H 0.328 0.672 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.369 0.631 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -18.833 1.499 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.311 5.311 11 C -0.104 4.104 12 C 0.056 3.944 13 H 0.108 0.892 14 O -0.352 6.352 15 C -0.135 4.135 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.146 4.146 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.002 0.998 24 H 0.144 0.856 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.216 0.784 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.955 -18.629 1.258 18.773 hybrid contribution -0.571 0.872 0.563 1.185 sum 1.384 -17.756 1.821 17.903 Atomic orbital electron populations 1.69958 1.06100 1.26863 1.51028 1.24994 0.94880 0.99378 0.95351 0.86530 0.79406 0.82587 0.78694 1.20111 1.21358 1.20262 1.21171 0.93546 0.90254 1.50228 0.91961 1.19556 0.90605 0.87569 0.95548 1.60573 1.20754 1.00783 1.49012 1.22653 0.95783 0.91673 1.00258 1.21944 0.91897 0.91452 0.89132 0.89247 1.86557 1.37015 1.96135 1.15503 1.21861 0.97077 0.95685 0.98927 1.21618 0.98848 0.97333 0.97684 1.21527 0.97663 0.94742 1.01672 1.21545 0.97709 0.98125 0.98347 1.21552 0.98649 0.97473 0.98026 1.21495 0.97405 0.93321 1.02393 0.92896 0.95599 0.99837 0.85566 0.95473 0.91839 0.78440 0.91122 0.91951 0.91278 0.92113 0.92188 0.92465 0.92143 0.92215 0.92340 0.91344 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.94 9.32 -34.44 -0.32 -15.26 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.19 5.22 5.44 -4.97 -0.03 5.19 16 10 N -0.68 -15.07 6.36 -115.06 -0.73 -15.81 16 11 C 0.03 0.47 4.99 -3.82 -0.02 0.45 16 12 C 0.12 1.66 2.76 -26.73 -0.07 1.59 16 13 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 14 O -0.55 -8.48 12.53 -35.23 -0.44 -8.92 16 15 C -0.12 -1.34 1.96 -90.62 -0.18 -1.52 16 16 C -0.12 -1.30 4.85 -26.73 -0.13 -1.43 16 17 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 18 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 19 C -0.12 -1.09 5.92 -26.71 -0.16 -1.24 16 20 C -0.11 -1.15 5.06 -26.71 -0.14 -1.28 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H -0.02 -0.46 8.14 -51.93 -0.42 -0.88 16 24 H 0.33 7.07 8.72 -39.29 -0.34 6.73 16 25 H 0.03 0.48 6.43 -51.93 -0.33 0.14 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.37 4.72 9.05 45.56 0.41 5.13 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.76 7.68 -51.92 -0.40 0.36 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -30.96 300.91 -8.42 -39.38 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.04 Total: 4.84 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.46 Total: -14.51 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.00 Total: -42.38 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.44 Total: -8.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.96 -8.42 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.867 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds