Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47035 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47157 * 59.99991 * 12 11 10 14 14 O 1.42901 * 109.47147 * 300.00445 * 12 11 10 15 15 C 1.52998 * 109.47380 * 180.02562 * 12 11 10 16 16 C 1.52998 * 109.46818 * 300.00102 * 15 12 11 17 17 C 1.53007 * 109.47035 * 179.97438 * 16 15 12 18 18 C 1.53004 * 109.46939 * 59.99640 * 17 16 15 19 19 C 1.52995 * 109.47196 * 300.00047 * 18 17 16 20 20 C 1.52994 * 109.47374 * 179.97438 * 15 12 11 21 21 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 24 24 H 1.00902 * 111.00068 * 56.04268 * 10 9 7 25 25 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 26 26 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 27 27 H 0.96706 * 113.99785 * 299.99503 * 14 12 11 28 28 H 1.08996 * 109.46919 * 59.99709 * 15 12 11 29 29 H 1.08996 * 109.47054 * 299.99524 * 16 15 12 30 30 H 1.08997 * 109.47660 * 60.00066 * 16 15 12 31 31 H 1.09005 * 109.46901 * 299.99840 * 17 16 15 32 32 H 1.08999 * 109.47196 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.46837 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46665 * 60.00350 * 18 17 16 35 35 H 1.08993 * 109.47468 * 299.99913 * 19 18 17 36 36 H 1.08997 * 109.47038 * 179.97438 * 19 18 17 37 37 H 1.09007 * 109.47225 * 300.00412 * 20 15 12 38 38 H 1.09005 * 109.47157 * 59.99971 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5302 -6.0431 -0.0006 13 1 3.1558 -5.9686 0.8890 14 8 3.3487 -5.9455 -1.1679 15 6 1.8009 -7.3880 -0.0006 16 6 0.9242 -7.4927 1.2490 17 6 0.1943 -8.8375 1.2487 18 6 1.2189 -9.9738 1.2477 19 6 2.0954 -9.8691 -0.0019 20 6 2.8257 -8.5240 -0.0019 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.8406 -3.5487 0.7808 25 1 0.8808 -4.9812 0.8903 26 1 0.8801 -4.9818 -0.8897 27 1 2.8573 -6.0041 -1.9988 28 1 1.1756 -7.4622 -0.8903 29 1 1.5495 -7.4185 2.1387 30 1 0.1940 -6.6835 1.2495 31 1 -0.4310 -8.9112 0.3589 32 1 -0.4306 -8.9119 2.1387 33 1 0.6989 -10.9318 1.2470 34 1 1.8442 -9.9000 2.1374 35 1 1.4702 -9.9429 -0.8916 36 1 2.8256 -10.6783 -0.0024 37 1 3.4500 -8.4492 -0.8924 38 1 3.4513 -8.4500 0.8877 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591764376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -109.382110 kcal Electronic energy + Delta-G solvation = -16027.252994 eV Core-core repulsion = 13480.940623 eV Total energy + Delta-G solvation = -2546.312371 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29286 -37.77266 -36.33672 -34.43401 -32.54027 -31.57188 -29.63379 -27.07192 -24.32196 -23.62177 -22.86124 -21.88227 -20.68944 -18.66546 -17.48360 -16.87805 -16.54926 -16.21303 -15.82121 -15.11255 -15.05722 -14.80978 -14.47716 -14.29979 -13.80750 -13.40215 -13.18656 -13.08385 -12.84804 -12.65069 -12.51204 -12.26980 -12.06515 -11.98361 -11.72685 -11.53176 -11.36032 -11.28078 -10.85366 -10.67181 -10.40668 -9.07102 -8.24048 -6.35642 1.40491 1.44417 1.52541 2.39416 3.08984 3.30069 3.59687 3.79525 3.93074 3.98395 4.05779 4.27427 4.38585 4.46525 4.51507 4.64178 4.65873 4.68448 4.71310 4.84629 4.94117 5.05811 5.09007 5.20357 5.23517 5.26691 5.30981 5.33368 5.42101 5.50069 5.59643 5.60824 6.00247 6.42691 6.68696 6.84870 6.96883 7.35533 8.87409 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056649 B = 0.004635 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.153299 B = 6039.901762 C = 6368.570415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.682 5.682 11 C 0.028 3.972 12 C 0.127 3.873 13 H 0.087 0.913 14 O -0.562 6.562 15 C -0.106 4.106 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.105 4.105 21 H 0.266 0.734 22 H -0.001 1.001 23 H -0.041 1.041 24 H 0.332 0.668 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.380 0.620 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -19.549 1.590 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.312 5.312 11 C -0.102 4.102 12 C 0.067 3.933 13 H 0.104 0.896 14 O -0.368 6.368 15 C -0.125 4.125 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.143 4.143 21 H 0.075 0.925 22 H 0.017 0.983 23 H -0.023 1.023 24 H 0.149 0.851 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.765 -19.373 1.346 19.616 hybrid contribution -0.850 1.051 0.525 1.450 sum 1.916 -18.323 1.871 18.517 Atomic orbital electron populations 1.70084 1.07813 1.28134 1.51417 1.25967 0.95815 1.03426 0.94435 0.85363 0.78111 0.77496 0.79190 1.19340 1.20577 1.19071 1.21526 0.93776 0.91539 1.50859 0.91925 1.19209 0.90611 0.89085 0.93012 1.60464 1.20125 1.01399 1.49236 1.22767 0.96619 0.90635 1.00176 1.21842 0.90955 0.91616 0.88865 0.89554 1.86525 1.37781 1.96203 1.16306 1.21747 0.97175 0.94237 0.99358 1.21612 0.98544 0.98016 0.97385 1.21518 0.97845 0.93970 1.02088 1.21544 0.97480 0.98341 0.98195 1.21538 0.98854 0.96693 0.98317 1.21456 0.97031 0.93709 1.02056 0.92544 0.98332 1.02320 0.85142 0.95209 0.92185 0.77149 0.90766 0.91984 0.92728 0.91984 0.91556 0.91084 0.92095 0.91924 0.91194 0.91753 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.73 9.32 25.60 0.24 -31.49 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.57 5.44 85.56 0.47 12.03 16 10 N -0.68 -30.63 6.36 -517.92 -3.29 -33.92 16 11 C 0.03 0.99 4.99 86.31 0.43 1.42 16 12 C 0.13 3.58 2.76 30.60 0.08 3.66 16 13 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 14 O -0.56 -16.91 12.53 -148.98 -1.87 -18.78 16 15 C -0.11 -2.32 1.96 -10.80 -0.02 -2.34 16 16 C -0.12 -2.51 4.85 30.60 0.15 -2.36 16 17 C -0.12 -2.03 5.92 30.60 0.18 -1.85 16 18 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 19 C -0.12 -1.84 5.92 30.61 0.18 -1.66 16 20 C -0.10 -2.04 5.06 30.61 0.15 -1.88 16 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 22 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 23 H -0.04 -2.41 8.14 -2.38 -0.02 -2.43 16 24 H 0.33 14.43 8.72 -89.69 -0.78 13.65 16 25 H 0.03 1.06 6.43 -2.39 -0.02 1.04 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.38 9.39 9.05 -74.05 -0.67 8.72 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.31 6.43 -2.39 -0.02 1.29 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.31 7.68 -2.38 -0.02 1.29 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -65.69 300.91 -0.77 -66.45 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.43 Total: 21.76 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 2.51 Total: -25.52 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -3.01 Total: -90.99 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -1.87 Total: -18.78 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.69 -0.77 -66.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.930 kcal (2) G-P(sol) polarization free energy of solvation -65.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds