Wall clock time and date at job start Sun Mar 29 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00268 * 2 1 4 4 O 1.20828 * 119.99778 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00365 * 180.02562 * 3 2 1 6 6 N 1.46507 * 110.43300 * 325.69978 * 5 3 2 7 7 C 1.46494 * 119.99697 * 235.76074 * 6 5 3 8 8 C 1.36939 * 119.99806 * 55.76123 * 6 5 3 9 9 H 1.08000 * 120.00216 * 24.05764 * 8 6 5 10 10 C 1.38812 * 119.99548 * 203.77909 * 8 6 5 11 11 N 1.31619 * 120.00046 * 18.07825 * 10 8 6 12 12 Si 1.86803 * 119.99845 * 198.06770 * 10 8 6 13 13 H 1.48503 * 109.46493 * 94.98317 * 12 10 8 14 14 H 1.48491 * 109.47477 * 214.98488 * 12 10 8 15 15 H 1.48505 * 109.47247 * 334.98925 * 12 10 8 16 16 C 1.54893 * 110.48757 * 88.23779 * 5 3 2 17 17 C 1.55236 * 102.58671 * 156.67956 * 16 5 3 18 18 C 1.54274 * 104.23081 * 322.08518 * 17 16 5 19 19 C 1.53872 * 106.59840 * 23.61304 * 18 17 16 20 20 H 1.09002 * 109.47357 * 60.00319 * 1 2 3 21 21 H 1.09009 * 109.47378 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47235 * 299.99803 * 1 2 3 23 23 H 1.09010 * 109.46848 * 205.42677 * 7 6 5 24 24 H 1.09000 * 109.47499 * 325.42434 * 7 6 5 25 25 H 1.09003 * 109.47356 * 85.42842 * 7 6 5 26 26 H 0.97000 * 119.99830 * 180.02562 * 11 10 8 27 27 H 1.08999 * 110.75964 * 275.07427 * 16 5 3 28 28 H 1.08999 * 110.74974 * 38.44045 * 16 5 3 29 29 H 1.08998 * 110.46861 * 203.40068 * 17 16 5 30 30 H 1.08995 * 110.58468 * 80.83075 * 17 16 5 31 31 H 1.09005 * 110.03098 * 264.32823 * 18 17 16 32 32 H 1.08994 * 110.02710 * 142.90083 * 18 17 16 33 33 H 1.08999 * 110.03214 * 240.71632 * 19 18 17 34 34 H 1.08996 * 110.03524 * 119.28207 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1368 0.1689 0.7726 7 6 5.0485 0.4467 1.8851 8 6 3.8177 -1.1245 0.4554 9 1 3.4894 -1.3702 -0.5437 10 6 3.9217 -2.1206 1.4165 11 7 3.9745 -1.8013 2.6923 12 14 3.9865 -3.9144 0.8991 13 1 5.4027 -4.3509 0.8030 14 1 3.2795 -4.7459 1.9060 15 1 3.3290 -4.0724 -0.4230 16 6 4.1095 1.2590 -1.4511 17 6 5.4976 1.9373 -1.2999 18 6 5.2641 3.0510 -0.2583 19 6 4.0362 2.6298 0.5678 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 5.7016 -0.4118 2.0427 24 1 5.6517 1.3237 1.6503 25 1 4.4708 0.6348 2.7901 26 1 4.0475 -2.4974 3.3638 27 1 4.2138 0.2363 -1.8134 28 1 3.4652 1.8399 -2.1111 29 1 5.8184 2.3647 -2.2499 30 1 6.2356 1.2228 -0.9355 31 1 5.0686 3.9979 -0.7616 32 1 6.1356 3.1450 0.3894 33 1 3.2448 3.3722 0.4655 34 1 4.3118 2.5193 1.6166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610901390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:05 Heat of formation + Delta-G solvation = -62.200699 kcal Electronic energy + Delta-G solvation = -17228.723909 eV Core-core repulsion = 14548.624384 eV Total energy + Delta-G solvation = -2680.099526 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88450 -37.66129 -35.47300 -34.01900 -30.89170 -28.85675 -27.97095 -26.59368 -25.56422 -22.67478 -21.48585 -20.03068 -18.46930 -17.24429 -16.48902 -15.73195 -15.43909 -15.10335 -14.35766 -13.81763 -13.42660 -12.96153 -12.66877 -12.52144 -12.06060 -11.71559 -11.34135 -11.08536 -10.92231 -10.78369 -10.68164 -10.57651 -10.42068 -10.37698 -10.05018 -9.87595 -9.84149 -9.71225 -9.49788 -8.46392 -6.79912 -5.80057 -3.19749 3.10842 3.37651 3.45610 3.47302 3.72697 4.47367 5.07283 5.17954 5.25284 5.47686 5.49091 5.72789 5.77473 5.85522 5.96102 6.02750 6.11198 6.16177 6.22537 6.37099 6.41100 6.55367 6.62711 6.76935 6.80637 6.91669 7.25006 7.34538 7.57293 7.86400 8.31182 8.74242 9.18273 9.78396 10.28083 11.27348 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.012947 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.417969 B = 2162.147134 C = 2763.769198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.461 3.539 4 O -0.550 6.550 5 C 0.207 3.793 6 N -0.569 5.569 7 C 0.155 3.845 8 C -0.237 4.237 9 H 0.075 0.925 10 C 0.009 3.991 11 N -0.899 5.899 12 Si 0.903 3.097 13 H -0.288 1.288 14 H -0.293 1.293 15 H -0.277 1.277 16 C -0.127 4.127 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.129 4.129 20 H 0.048 0.952 21 H 0.090 0.910 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.010 0.990 25 H 0.019 0.981 26 H 0.253 0.747 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 5.258 -5.422 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.304 3.696 4 O -0.441 6.441 5 C 0.114 3.886 6 N -0.291 5.291 7 C 0.011 3.989 8 C -0.366 4.366 9 H 0.093 0.907 10 C -0.191 4.191 11 N -0.542 5.542 12 Si 0.733 3.267 13 H -0.215 1.215 14 H -0.219 1.219 15 H -0.202 1.202 16 C -0.167 4.167 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.167 4.167 20 H 0.066 0.934 21 H 0.108 0.892 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.281 5.395 -5.229 7.518 hybrid contribution -0.457 -0.985 0.004 1.086 sum -0.176 4.410 -5.225 6.840 Atomic orbital electron populations 1.23130 0.80437 1.02449 1.00833 1.87074 1.20097 1.32802 1.82356 1.25698 0.93270 0.80832 0.69800 1.90501 1.67702 1.37206 1.48712 1.20715 0.83665 0.90216 0.93998 1.44072 1.49184 1.00769 1.35032 1.20892 0.91845 0.97194 0.88957 1.19131 1.40040 0.82265 0.95119 0.90684 1.24995 1.00830 0.98380 0.94856 1.70117 1.53097 1.31949 0.99072 0.86250 0.77592 0.84993 0.77830 1.21543 1.21911 1.20198 1.22946 0.96327 1.01469 0.95941 1.22262 0.97484 0.97284 0.97847 1.22046 0.97641 0.98143 0.97557 1.22514 0.98042 0.95409 1.00731 0.93350 0.89197 0.93092 0.92358 0.97157 0.96267 0.93679 0.90059 0.92448 0.92517 0.90968 0.92380 0.92052 0.90355 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.31 -7.16 8.25 -39.25 -0.32 -7.48 16 3 C 0.46 10.57 6.89 36.00 0.25 10.82 16 4 O -0.55 -12.84 15.33 -18.75 -0.29 -13.13 16 5 C 0.21 4.41 0.86 -131.31 -0.11 4.30 16 6 N -0.57 -13.74 2.84 -165.59 -0.47 -14.21 16 7 C 0.16 3.64 7.67 59.84 0.46 4.10 16 8 C -0.24 -6.20 7.09 -15.06 -0.11 -6.31 16 9 H 0.08 1.97 7.06 -52.49 -0.37 1.60 16 10 C 0.01 0.23 4.91 -17.43 -0.09 0.15 16 11 N -0.90 -25.50 11.14 55.49 0.62 -24.88 16 12 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C -0.13 -2.34 5.93 -24.55 -0.15 -2.49 16 17 C -0.11 -1.76 6.80 -24.88 -0.17 -1.93 16 18 C -0.12 -1.79 6.24 -25.61 -0.16 -1.95 16 19 C -0.13 -2.42 5.28 -25.62 -0.14 -2.55 16 20 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 21 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 22 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 23 H 0.06 1.47 6.89 -51.92 -0.36 1.11 16 24 H 0.01 0.20 5.70 -51.93 -0.30 -0.09 16 25 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.08 1.58 7.11 -51.93 -0.37 1.21 16 28 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 33 H 0.08 1.49 6.79 -51.93 -0.35 1.13 16 34 H 0.08 1.54 5.79 -51.93 -0.30 1.24 16 LS Contribution 270.98 15.07 4.08 4.08 Total: -1.00 -29.82 270.98 -5.50 -35.33 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.95 Total: -1.73 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 0.86 Total: 5.68 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.15 Total: -39.09 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.61 Total: -20.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.82 -5.50 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610901390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.875 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds