Wall clock time and date at job start Sun Mar 29 2020 21:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00268 * 2 1 4 4 O 1.20828 * 119.99778 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00365 * 180.02562 * 3 2 1 6 6 N 1.46507 * 110.43300 * 325.69978 * 5 3 2 7 7 C 1.46494 * 119.99697 * 235.76074 * 6 5 3 8 8 C 1.36939 * 119.99806 * 55.76123 * 6 5 3 9 9 H 1.08000 * 120.00216 * 24.05764 * 8 6 5 10 10 C 1.38812 * 119.99548 * 203.77909 * 8 6 5 11 11 N 1.31619 * 120.00046 * 18.07825 * 10 8 6 12 12 Si 1.86803 * 119.99845 * 198.06770 * 10 8 6 13 13 H 1.48503 * 109.46493 * 94.98317 * 12 10 8 14 14 H 1.48491 * 109.47477 * 214.98488 * 12 10 8 15 15 H 1.48505 * 109.47247 * 334.98925 * 12 10 8 16 16 C 1.54893 * 110.48757 * 88.23779 * 5 3 2 17 17 C 1.55236 * 102.58671 * 156.67956 * 16 5 3 18 18 C 1.54274 * 104.23081 * 322.08518 * 17 16 5 19 19 C 1.53872 * 106.59840 * 23.61304 * 18 17 16 20 20 H 1.09002 * 109.47357 * 60.00319 * 1 2 3 21 21 H 1.09009 * 109.47378 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47235 * 299.99803 * 1 2 3 23 23 H 1.09010 * 109.46848 * 205.42677 * 7 6 5 24 24 H 1.09000 * 109.47499 * 325.42434 * 7 6 5 25 25 H 1.09003 * 109.47356 * 85.42842 * 7 6 5 26 26 H 0.97000 * 119.99830 * 180.02562 * 11 10 8 27 27 H 1.08999 * 110.75964 * 275.07427 * 16 5 3 28 28 H 1.08999 * 110.74974 * 38.44045 * 16 5 3 29 29 H 1.08998 * 110.46861 * 203.40068 * 17 16 5 30 30 H 1.08995 * 110.58468 * 80.83075 * 17 16 5 31 31 H 1.09005 * 110.03098 * 264.32823 * 18 17 16 32 32 H 1.08994 * 110.02710 * 142.90083 * 18 17 16 33 33 H 1.08999 * 110.03214 * 240.71632 * 19 18 17 34 34 H 1.08996 * 110.03524 * 119.28207 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1368 0.1689 0.7726 7 6 5.0485 0.4467 1.8851 8 6 3.8177 -1.1245 0.4554 9 1 3.4894 -1.3702 -0.5437 10 6 3.9217 -2.1206 1.4165 11 7 3.9745 -1.8013 2.6923 12 14 3.9865 -3.9144 0.8991 13 1 5.4027 -4.3509 0.8030 14 1 3.2795 -4.7459 1.9060 15 1 3.3290 -4.0724 -0.4230 16 6 4.1095 1.2590 -1.4511 17 6 5.4976 1.9373 -1.2999 18 6 5.2641 3.0510 -0.2583 19 6 4.0362 2.6298 0.5678 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 5.7016 -0.4118 2.0427 24 1 5.6517 1.3237 1.6503 25 1 4.4708 0.6348 2.7901 26 1 4.0475 -2.4974 3.3638 27 1 4.2138 0.2363 -1.8134 28 1 3.4652 1.8399 -2.1111 29 1 5.8184 2.3647 -2.2499 30 1 6.2356 1.2228 -0.9355 31 1 5.0686 3.9979 -0.7616 32 1 6.1356 3.1450 0.3894 33 1 3.2448 3.3722 0.4655 34 1 4.3118 2.5193 1.6166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610901390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:04 Heat of formation + Delta-G solvation = -79.748818 kcal Electronic energy + Delta-G solvation = -17229.484853 eV Core-core repulsion = 14548.624384 eV Total energy + Delta-G solvation = -2680.860469 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60287 -39.27860 -37.26369 -35.78584 -32.75687 -30.42844 -29.54300 -28.10485 -27.45071 -24.47089 -23.21501 -21.39655 -20.13025 -19.05018 -18.33295 -17.47018 -17.11517 -16.73739 -16.11183 -15.42292 -15.14865 -14.52581 -14.40902 -14.12689 -13.79996 -13.29840 -13.05163 -12.80405 -12.68896 -12.40734 -12.26525 -12.22420 -12.02671 -11.86093 -11.72687 -11.63696 -11.55743 -11.33084 -11.11928 -10.46383 -8.75729 -7.82127 -5.24453 1.32613 1.50506 1.52609 1.60814 2.10155 2.55362 3.40634 3.43441 3.69976 3.82265 4.04211 4.31049 4.33214 4.41001 4.57452 4.61333 4.65298 4.71136 4.82446 4.93520 5.00680 5.11248 5.15825 5.31218 5.32406 5.39533 5.58125 5.61387 5.64082 5.79608 6.34418 6.95085 7.19449 7.84337 8.29983 9.24377 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.012947 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.417969 B = 2162.147134 C = 2763.769198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.337 6.337 3 C 0.455 3.545 4 O -0.560 6.560 5 C 0.192 3.808 6 N -0.581 5.581 7 C 0.172 3.828 8 C -0.229 4.229 9 H 0.072 0.928 10 C -0.044 4.044 11 N -0.935 5.935 12 Si 0.960 3.040 13 H -0.287 1.287 14 H -0.301 1.301 15 H -0.268 1.268 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.127 4.127 20 H 0.066 0.934 21 H 0.114 0.886 22 H 0.047 0.953 23 H 0.034 0.966 24 H 0.045 0.955 25 H -0.010 1.010 26 H 0.247 0.753 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 6.113 -7.059 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.251 6.251 3 C 0.298 3.702 4 O -0.452 6.452 5 C 0.100 3.900 6 N -0.303 5.303 7 C 0.027 3.973 8 C -0.359 4.359 9 H 0.090 0.910 10 C -0.239 4.239 11 N -0.581 5.581 12 Si 0.789 3.211 13 H -0.214 1.214 14 H -0.228 1.228 15 H -0.192 1.192 16 C -0.161 4.161 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.165 4.165 20 H 0.085 0.915 21 H 0.132 0.868 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.008 0.992 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.691 6.266 -6.903 9.348 hybrid contribution -0.710 -1.173 0.455 1.444 sum -0.019 5.093 -6.448 8.217 Atomic orbital electron populations 1.23405 0.77852 1.04410 1.01568 1.86982 1.22758 1.33073 1.82269 1.25896 0.94061 0.80684 0.69514 1.90482 1.68116 1.37311 1.49253 1.21090 0.82723 0.90584 0.95571 1.44180 1.49834 1.01052 1.35280 1.20658 0.91279 0.97422 0.87918 1.19269 1.38493 0.83375 0.94720 0.90994 1.25634 1.01737 1.01656 0.94892 1.70255 1.55527 1.32456 0.99854 0.85346 0.77380 0.80907 0.77423 1.21355 1.22774 1.19248 1.22905 0.98106 1.01350 0.93780 1.22253 0.95334 0.96995 0.99624 1.22055 0.96329 0.98979 0.97260 1.22522 0.99570 0.93762 1.00646 0.91540 0.86760 0.93408 0.94713 0.93711 0.99206 0.94371 0.91467 0.91130 0.89235 0.92096 0.89768 0.90598 0.90685 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 10.56 113.37 1.20 1.95 16 2 O -0.34 -15.40 8.25 -51.41 -0.42 -15.82 16 3 C 0.45 20.54 6.89 71.23 0.49 21.03 16 4 O -0.56 -25.58 15.33 21.96 0.34 -25.25 16 5 C 0.19 7.97 0.86 3.93 0.00 7.98 16 6 N -0.58 -28.00 2.84 -677.79 -1.92 -29.92 16 7 C 0.17 8.10 7.67 127.77 0.98 9.08 16 8 C -0.23 -12.02 7.09 84.03 0.60 -11.42 16 9 H 0.07 3.77 7.06 -2.91 -0.02 3.75 16 10 C -0.04 -2.39 4.91 84.86 0.42 -1.98 16 11 N -0.93 -54.33 11.14 21.65 0.24 -54.09 16 12 Si 0.96 44.30 29.59 68.60 2.03 46.33 16 13 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 C -0.12 -4.23 5.93 32.01 0.19 -4.04 16 17 C -0.10 -2.95 6.80 31.79 0.22 -2.74 16 18 C -0.11 -2.94 6.24 31.32 0.20 -2.75 16 19 C -0.13 -4.52 5.28 31.32 0.17 -4.36 16 20 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 21 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 22 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 23 H 0.03 1.77 6.89 -2.38 -0.02 1.75 16 24 H 0.04 1.76 5.70 -2.39 -0.01 1.75 16 25 H -0.01 -0.55 7.84 -2.39 -0.02 -0.57 16 26 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.07 2.51 7.11 -2.39 -0.02 2.49 16 28 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.08 1.87 7.90 -2.39 -0.02 1.85 16 33 H 0.07 2.71 6.79 -2.39 -0.02 2.70 16 34 H 0.07 2.57 5.79 -2.39 -0.01 2.56 16 Total: -1.00 -64.05 270.98 5.79 -58.26 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.08 Total: 7.74 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 4.45 Total: 12.75 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.68 Total: -84.01 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.09 Total: -41.07 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.05 5.79 -58.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610901390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.492 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds