Wall clock time and date at job start Sun Mar 29 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 C 1.52997 * 109.54484 * 300.11377 * 3 2 1 5 5 C 1.53100 * 109.50685 * 60.21726 * 3 2 1 6 6 O 1.43016 * 109.25960 * 176.78110 * 5 3 2 7 7 C 1.43007 * 113.73987 * 301.33478 * 6 5 3 8 8 C 1.53092 * 109.26265 * 58.66909 * 7 6 5 9 9 N 1.47013 * 109.50738 * 180.02562 * 3 2 1 10 10 C 1.46898 * 110.99803 * 57.67547 * 9 3 2 11 11 C 1.53006 * 109.47006 * 189.67818 * 10 9 3 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47046 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46873 * 120.00118 * 16 14 12 19 19 H 1.48497 * 109.47510 * 240.00153 * 16 14 12 20 20 H 1.09001 * 109.46729 * 299.99963 * 1 2 3 21 21 H 1.08995 * 109.47141 * 59.99445 * 1 2 3 22 22 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46729 * 240.00037 * 2 1 3 24 24 H 1.08996 * 109.47157 * 119.99998 * 2 1 3 25 25 H 1.09004 * 109.46796 * 299.88877 * 4 3 2 26 26 H 1.09002 * 109.47328 * 59.88748 * 4 3 2 27 27 H 1.09004 * 109.47564 * 179.89293 * 4 3 2 28 28 H 1.09004 * 109.50387 * 56.84889 * 5 3 2 29 29 H 1.08994 * 109.50893 * 296.72323 * 5 3 2 30 30 H 1.08998 * 109.50965 * 298.73359 * 7 6 5 31 31 H 1.09006 * 109.54165 * 178.63047 * 7 6 5 32 32 H 1.08997 * 109.51235 * 183.21501 * 8 7 6 33 33 H 1.09004 * 109.50861 * 63.08728 * 8 7 6 34 34 H 1.09001 * 109.47062 * 69.68072 * 10 9 3 35 35 H 1.08993 * 109.47084 * 309.67519 * 10 9 3 36 36 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 37 37 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5286 2.1662 -1.2472 5 6 1.5346 2.1634 1.2525 6 8 2.0753 3.4870 1.2854 7 6 3.5049 3.5251 1.2869 8 6 4.0302 2.8181 0.0348 9 7 3.5101 1.4433 -0.0006 10 6 4.0365 0.7105 -1.1599 11 6 5.5470 0.5244 -1.0026 12 6 6.0869 -0.2280 -2.1915 13 1 5.4195 -0.5416 -2.9806 14 6 7.4330 -0.5150 -2.2724 15 7 8.2458 -0.1327 -1.3117 16 14 8.1024 -1.4469 -3.7464 17 1 6.9911 -1.7601 -4.6804 18 1 9.1132 -0.6112 -4.4430 19 1 8.7351 -2.7098 -3.2881 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.8920 1.6547 -2.1386 26 1 0.4386 2.1652 -1.2466 27 1 1.8911 3.1942 -1.2451 28 1 1.8540 1.6176 2.1404 29 1 0.4462 2.2153 1.2284 30 1 3.8816 3.0189 2.1757 31 1 3.8420 4.5617 1.2881 32 1 5.1196 2.7945 0.0601 33 1 3.6978 3.3556 -0.8533 34 1 3.8328 1.2752 -2.0697 35 1 3.5547 -0.2652 -1.2222 36 1 6.0288 1.5001 -0.9402 37 1 5.7507 -0.0402 -0.0927 38 1 9.1928 -0.3349 -1.3685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611178658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:59 Heat of formation + Delta-G solvation = -71.377749 kcal Electronic energy + Delta-G solvation = -16925.236445 eV Core-core repulsion = 14380.572067 eV Total energy + Delta-G solvation = -2544.664378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34132 -37.51311 -35.92087 -34.70310 -31.83292 -30.72727 -28.84644 -27.70860 -25.86809 -25.36513 -22.72071 -22.24498 -19.44717 -18.61162 -17.42443 -17.19951 -16.66825 -16.27744 -16.05057 -15.57720 -15.11082 -14.89094 -14.31112 -14.19703 -13.98530 -13.65455 -13.23664 -13.10111 -12.83185 -12.72666 -12.48678 -12.42651 -12.22000 -12.04287 -11.80560 -11.51198 -11.33451 -11.25329 -11.11152 -10.55113 -10.42446 -9.17557 -8.21990 -6.33242 1.38530 1.38753 1.52037 2.38220 2.85919 2.97991 3.11470 3.75725 3.91082 4.01742 4.07872 4.21123 4.30753 4.39618 4.51905 4.53135 4.66503 4.70099 4.71455 4.74428 4.84701 4.88477 4.97450 5.00145 5.08872 5.15701 5.22933 5.35932 5.44325 5.49198 5.64223 5.77556 6.06409 6.15352 6.29147 6.32383 6.83836 7.35963 8.90335 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.006904 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.710819 B = 4054.873183 C = 4557.767911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.069 3.931 4 C -0.169 4.169 5 C 0.076 3.924 6 O -0.393 6.393 7 C 0.071 3.929 8 C 0.016 3.984 9 N -0.538 5.538 10 C 0.079 3.921 11 C 0.038 3.962 12 C -0.544 4.544 13 H 0.058 0.942 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.017 0.983 35 H 0.069 0.931 36 H -0.007 1.007 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 4.096 3.487 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.021 4.021 4 C -0.227 4.227 5 C -0.001 4.001 6 O -0.312 6.312 7 C -0.006 4.006 8 C -0.112 4.112 9 N -0.262 5.262 10 C -0.048 4.048 11 C 0.001 3.999 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.202 1.202 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.087 0.913 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.818 4.024 3.978 15.862 hybrid contribution 1.019 -0.328 -1.454 1.805 sum -13.799 3.696 2.525 14.507 Atomic orbital electron populations 1.21852 0.93125 1.02685 1.02735 1.21563 0.97426 0.93903 1.02102 1.21872 0.87018 0.96938 0.96282 1.22347 1.02717 1.00165 0.97505 1.22856 0.99402 0.82452 0.95367 1.87906 1.20494 1.27957 1.94803 1.22677 0.80551 1.01538 0.95837 1.22780 1.00442 0.89266 0.98722 1.62451 1.07138 1.14031 1.42620 1.22011 0.96228 0.96977 0.89559 1.18908 0.90889 0.94900 0.95239 1.21636 0.93677 1.36405 1.06496 0.92383 1.25947 0.97432 0.96835 0.99355 1.70113 1.04420 1.47888 1.34675 0.85399 0.78408 0.78239 0.78996 1.18647 1.20312 1.20229 0.91148 0.91911 0.91662 0.92761 0.91911 0.93786 0.89695 0.93133 0.92676 0.86114 0.92553 0.86622 0.91336 0.94503 0.96487 0.91278 0.98897 0.99064 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.21 71.98 0.66 -2.04 16 2 C -0.11 -2.95 4.72 30.59 0.14 -2.81 16 3 C 0.07 1.98 0.46 3.54 0.00 1.98 16 4 C -0.17 -4.63 7.32 71.98 0.53 -4.10 16 5 C 0.08 1.92 5.25 72.02 0.38 2.29 16 6 O -0.39 -11.11 10.28 -148.98 -1.53 -12.64 16 7 C 0.07 2.02 7.01 72.01 0.50 2.52 16 8 C 0.02 0.57 5.04 86.31 0.44 1.00 16 9 N -0.54 -19.89 4.49 -845.76 -3.80 -23.68 16 10 C 0.08 3.45 4.05 86.31 0.35 3.80 16 11 C 0.04 2.07 4.90 29.85 0.15 2.21 16 12 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.13 5.46 84.65 0.46 0.60 16 15 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 16 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H 0.07 1.08 6.51 -2.39 -0.02 1.07 16 21 H 0.06 1.10 6.43 -2.39 -0.02 1.08 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.05 1.61 6.17 -2.39 -0.01 1.60 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.32 6.68 -2.38 -0.02 1.31 16 26 H 0.08 1.85 6.43 -2.39 -0.02 1.84 16 27 H 0.05 1.48 6.07 -2.38 -0.01 1.47 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.12 2.36 6.62 -2.39 -0.02 2.34 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.07 2.74 6.37 -2.39 -0.02 2.72 16 33 H 0.04 1.30 6.39 -2.39 -0.02 1.28 16 34 H 0.02 0.75 6.88 -2.39 -0.02 0.73 16 35 H 0.07 2.94 5.77 -2.39 -0.01 2.93 16 36 H -0.01 -0.42 6.51 -2.39 -0.02 -0.44 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -65.26 283.17 1.86 -63.40 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.03 Total: 9.06 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.85 Total: -25.81 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.51 Total: -80.69 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.53 Total: -12.64 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.26 1.86 -63.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611178658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.973 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds