Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46880 * 2 1 4 4 C 1.42898 * 114.00104 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.56094 * 355.69291 * 4 3 2 6 6 C 1.53001 * 117.50074 * 141.37906 * 4 3 2 7 7 C 1.53000 * 60.00089 * 107.49552 * 6 4 3 8 8 H 1.08996 * 117.50430 * 107.51106 * 7 6 4 9 9 C 1.50700 * 117.49897 * 252.51789 * 7 6 4 10 10 O 1.21279 * 120.00514 * 68.60261 * 9 7 6 11 11 N 1.34779 * 119.99894 * 248.60937 * 9 7 6 12 12 C 1.46499 * 120.00360 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47058 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46700 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00803 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 H 1.09004 * 109.46835 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47190 * 299.99944 * 1 2 3 24 24 H 1.08997 * 109.47008 * 59.99553 * 1 2 3 25 25 H 1.09002 * 109.47253 * 240.00535 * 2 1 3 26 26 H 1.08999 * 109.47058 * 119.99666 * 2 1 3 27 27 H 1.08994 * 117.49542 * 0.02562 * 6 4 3 28 28 H 1.08993 * 117.49780 * 214.98334 * 6 4 3 29 29 H 0.97006 * 119.99489 * 359.97438 * 11 9 7 30 30 H 1.09004 * 109.47073 * 59.99564 * 12 11 9 31 31 H 1.08997 * 109.46623 * 299.99849 * 12 11 9 32 32 H 1.09004 * 109.47139 * 60.00089 * 13 12 11 33 33 H 1.08997 * 109.47675 * 299.99688 * 13 12 11 34 34 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9771 0.5199 0.0748 6 6 4.0517 2.5729 -0.8464 7 6 4.0421 2.6877 0.6793 8 1 4.9904 2.5553 1.2000 9 6 3.0956 3.6851 1.2960 10 8 1.8985 3.4986 1.2425 11 7 3.5796 4.7847 1.9071 12 6 2.6595 5.7546 2.5062 13 6 3.4605 6.8993 3.1299 14 6 2.5140 7.8974 3.7456 15 1 1.4479 7.7316 3.6974 16 6 3.0091 9.0223 4.3706 17 7 2.1831 9.8930 4.9084 18 14 4.8530 9.3095 4.4535 19 1 5.2875 10.0832 3.2627 20 1 5.5570 8.0022 4.4782 21 1 5.1805 10.0714 5.6854 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.3735 3.2191 -1.4037 28 1 5.0063 2.3646 -1.3293 29 1 4.5371 4.9337 1.9501 30 1 2.0663 5.2640 3.2780 31 1 1.9977 6.1510 1.7363 32 1 4.0540 7.3900 2.3584 33 1 4.1221 6.5027 3.8999 34 1 2.5314 10.6846 5.3478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612060847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -63.396840 kcal Electronic energy + Delta-G solvation = -15350.318161 eV Core-core repulsion = 12670.166767 eV Total energy + Delta-G solvation = -2680.151394 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70856 -37.87811 -35.29580 -34.64287 -32.71513 -30.83150 -30.07848 -25.64150 -23.25248 -22.92185 -22.19140 -20.70284 -19.68913 -17.66464 -16.84969 -15.72261 -15.71021 -15.56262 -14.83839 -14.43229 -14.11457 -13.76866 -13.15425 -12.80538 -12.64959 -12.57250 -12.41566 -12.15174 -11.44777 -11.25601 -11.17284 -11.06064 -10.54840 -10.32412 -10.17019 -9.93273 -9.42346 -9.28261 -9.02681 -8.60378 -8.39674 -6.08506 -4.08274 2.85926 3.27077 3.34484 3.36106 3.42171 3.63898 3.89655 4.40059 4.67472 4.75998 4.86261 4.99735 5.15601 5.24444 5.25501 5.26745 5.30615 5.57067 5.66073 5.84700 5.88910 6.10517 6.20457 6.27405 6.61892 6.88009 7.20272 7.24900 7.28199 7.70443 8.05710 8.47496 8.76828 8.96379 9.51778 11.04655 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.048849 B = 0.004739 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.051548 B = 5907.160909 C = 6360.373233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.049 3.951 5 H 0.115 0.885 6 C -0.162 4.162 7 C -0.195 4.195 8 H 0.125 0.875 9 C 0.531 3.469 10 O -0.521 6.521 11 N -0.728 5.728 12 C 0.132 3.868 13 C -0.022 4.022 14 C -0.522 4.522 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.266 1.266 21 H -0.287 1.287 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.394 0.606 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.076 -18.879 -10.528 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.239 6.239 4 C -0.011 4.011 5 H 0.132 0.868 6 C -0.200 4.200 7 C -0.216 4.216 8 H 0.143 0.857 9 C 0.315 3.685 10 O -0.396 6.396 11 N -0.379 5.379 12 C 0.010 3.990 13 C -0.060 4.060 14 C -0.560 4.560 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.191 1.191 21 H -0.213 1.213 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.227 0.773 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.021 -18.664 -10.447 21.970 hybrid contribution 1.701 0.270 0.237 1.739 sum 6.721 -18.394 -10.209 22.085 Atomic orbital electron populations 1.21706 0.93612 1.01769 1.03646 1.22531 0.95944 0.84143 0.99511 1.88210 1.17007 1.25170 1.93548 1.22510 0.83634 0.92848 1.02093 0.86778 1.23402 1.02821 1.02510 0.91276 1.22821 1.01413 1.00347 0.97054 0.85722 1.19441 0.88565 0.81629 0.78831 1.90741 1.15421 1.75597 1.57846 1.46282 1.10755 1.23058 1.57787 1.21457 0.92163 0.88713 0.96711 1.19789 0.96707 0.93606 0.95848 1.20942 0.94718 1.04568 1.35812 0.90641 1.25007 0.97902 0.95667 0.94743 1.69909 1.34675 1.11735 1.37463 0.86744 0.86037 0.78566 0.77677 1.20233 1.19090 1.21291 0.91387 0.91429 0.91894 0.93695 0.93530 0.87625 0.87361 0.77298 0.92125 0.92153 0.96475 0.96054 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.59 6.53 37.16 0.24 0.84 16 3 O -0.32 -4.72 8.48 -57.36 -0.49 -5.21 16 4 C 0.05 0.56 6.40 -26.73 -0.17 0.39 16 5 H 0.11 0.93 7.93 -51.93 -0.41 0.51 16 6 C -0.16 -1.72 10.18 -26.73 -0.27 -1.99 16 7 C -0.19 -2.42 6.19 -91.77 -0.57 -2.99 16 8 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 9 C 0.53 9.31 7.61 -10.98 -0.08 9.23 16 10 O -0.52 -11.30 14.92 -16.57 -0.25 -11.55 16 11 N -0.73 -12.69 5.56 -60.30 -0.33 -13.03 16 12 C 0.13 2.82 5.61 -4.04 -0.02 2.80 16 13 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 14 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 15 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 18 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.39 5.70 8.47 -40.82 -0.35 5.35 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 33 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 292.12 15.07 4.40 4.40 Total: -1.00 -34.22 292.12 -6.94 -41.16 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.34 Total: 1.41 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.04 Total: -6.88 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.44 Total: -39.97 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.73 Total: -16.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.22 -6.94 -41.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612060847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.238 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds