Wall clock time and date at job start Sun Mar 29 2020 21:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46880 * 2 1 4 4 C 1.42898 * 114.00104 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.56094 * 355.69291 * 4 3 2 6 6 C 1.53001 * 117.50074 * 141.37906 * 4 3 2 7 7 C 1.53000 * 60.00089 * 107.49552 * 6 4 3 8 8 H 1.08996 * 117.50430 * 107.51106 * 7 6 4 9 9 C 1.50700 * 117.49897 * 252.51789 * 7 6 4 10 10 O 1.21279 * 120.00514 * 68.60261 * 9 7 6 11 11 N 1.34779 * 119.99894 * 248.60937 * 9 7 6 12 12 C 1.46499 * 120.00360 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47058 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46700 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00803 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 H 1.09004 * 109.46835 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47190 * 299.99944 * 1 2 3 24 24 H 1.08997 * 109.47008 * 59.99553 * 1 2 3 25 25 H 1.09002 * 109.47253 * 240.00535 * 2 1 3 26 26 H 1.08999 * 109.47058 * 119.99666 * 2 1 3 27 27 H 1.08994 * 117.49542 * 0.02562 * 6 4 3 28 28 H 1.08993 * 117.49780 * 214.98334 * 6 4 3 29 29 H 0.97006 * 119.99489 * 359.97438 * 11 9 7 30 30 H 1.09004 * 109.47073 * 59.99564 * 12 11 9 31 31 H 1.08997 * 109.46623 * 299.99849 * 12 11 9 32 32 H 1.09004 * 109.47139 * 60.00089 * 13 12 11 33 33 H 1.08997 * 109.47675 * 299.99688 * 13 12 11 34 34 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9771 0.5199 0.0748 6 6 4.0517 2.5729 -0.8464 7 6 4.0421 2.6877 0.6793 8 1 4.9904 2.5553 1.2000 9 6 3.0956 3.6851 1.2960 10 8 1.8985 3.4986 1.2425 11 7 3.5796 4.7847 1.9071 12 6 2.6595 5.7546 2.5062 13 6 3.4605 6.8993 3.1299 14 6 2.5140 7.8974 3.7456 15 1 1.4479 7.7316 3.6974 16 6 3.0091 9.0223 4.3706 17 7 2.1831 9.8930 4.9084 18 14 4.8530 9.3095 4.4535 19 1 5.2875 10.0832 3.2627 20 1 5.5570 8.0022 4.4782 21 1 5.1805 10.0714 5.6854 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.3735 3.2191 -1.4037 28 1 5.0063 2.3646 -1.3293 29 1 4.5371 4.9337 1.9501 30 1 2.0663 5.2640 3.2780 31 1 1.9977 6.1510 1.7363 32 1 4.0540 7.3900 2.3584 33 1 4.1221 6.5027 3.8999 34 1 2.5314 10.6846 5.3478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612060847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:58 Heat of formation + Delta-G solvation = -87.969938 kcal Electronic energy + Delta-G solvation = -15351.383731 eV Core-core repulsion = 12670.166767 eV Total energy + Delta-G solvation = -2681.216964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.93932 -38.97377 -36.66238 -35.94735 -34.76116 -32.08680 -31.57629 -27.40247 -24.67757 -23.73633 -23.02503 -22.54771 -21.01931 -19.04092 -18.68196 -16.99711 -16.81323 -16.43419 -16.33945 -16.21404 -15.65579 -15.03507 -14.75549 -14.52617 -13.92218 -13.55491 -13.34928 -13.27281 -13.03775 -12.99870 -12.22814 -12.17138 -12.07039 -11.83055 -11.76449 -11.53364 -11.37138 -10.79765 -10.71975 -10.01778 -9.97513 -8.31166 -6.38958 1.38506 1.41622 1.53113 1.61599 2.28561 2.36470 2.65893 2.93275 3.03672 3.82434 3.86626 3.98472 4.19475 4.21329 4.37160 4.39480 4.45360 4.51539 4.53173 4.72953 4.84543 4.90263 5.03168 5.06666 5.16839 5.26996 5.38903 5.45015 5.66163 6.21137 6.44432 6.66129 6.74769 7.25605 7.42124 8.85900 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.048849 B = 0.004739 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.051548 B = 5907.160909 C = 6360.373233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.368 6.368 4 C 0.041 3.959 5 H 0.156 0.844 6 C -0.147 4.147 7 C -0.203 4.203 8 H 0.165 0.835 9 C 0.522 3.478 10 O -0.572 6.572 11 N -0.718 5.718 12 C 0.146 3.854 13 C -0.010 4.010 14 C -0.542 4.542 15 H 0.025 0.975 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.962 3.038 19 H -0.264 1.264 20 H -0.236 1.236 21 H -0.285 1.285 22 H 0.097 0.903 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.152 0.848 29 H 0.413 0.587 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.909 -20.728 -11.534 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.286 6.286 4 C -0.017 4.017 5 H 0.173 0.827 6 C -0.185 4.185 7 C -0.224 4.224 8 H 0.182 0.818 9 C 0.310 3.690 10 O -0.451 6.451 11 N -0.370 5.370 12 C 0.022 3.978 13 C -0.048 4.048 14 C -0.581 4.581 15 H 0.044 0.956 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.784 3.216 19 H -0.189 1.189 20 H -0.159 1.159 21 H -0.211 1.211 22 H 0.115 0.885 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.170 0.830 29 H 0.249 0.751 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.883 -20.543 -11.471 25.150 hybrid contribution 0.352 0.832 0.537 1.051 sum 9.235 -19.711 -10.933 24.359 Atomic orbital electron populations 1.21752 0.94134 1.03106 1.01824 1.22730 0.95701 0.83012 1.01195 1.88165 1.19193 1.27508 1.93777 1.22999 0.82749 0.94317 1.01673 0.82683 1.23509 1.04055 1.01212 0.89674 1.22871 1.01717 0.99479 0.98373 0.81807 1.20445 0.88880 0.81872 0.77815 1.90724 1.18102 1.76686 1.59571 1.46059 1.11100 1.22397 1.57465 1.20956 0.92299 0.89010 0.95511 1.19632 0.95917 0.92887 0.96378 1.21271 0.93586 1.06487 1.36737 0.95627 1.26120 1.04399 0.94960 0.93870 1.70083 1.37741 1.12626 1.38674 0.85496 0.78225 0.79863 0.78024 1.18893 1.15922 1.21088 0.88460 0.94106 0.92814 0.91074 0.92500 0.90255 0.83030 0.75058 0.94348 0.94481 0.94604 0.94391 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 10.28 71.98 0.74 -2.34 16 2 C 0.05 0.99 6.53 71.98 0.47 1.46 16 3 O -0.37 -10.52 8.48 -127.82 -1.08 -11.60 16 4 C 0.04 0.83 6.40 30.60 0.20 1.03 16 5 H 0.16 1.75 7.93 -2.39 -0.02 1.73 16 6 C -0.15 -2.63 10.18 30.59 0.31 -2.32 16 7 C -0.20 -4.42 6.19 -11.54 -0.07 -4.49 16 8 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 9 C 0.52 17.98 7.61 87.66 0.67 18.65 16 10 O -0.57 -25.63 14.92 18.13 0.27 -25.36 16 11 N -0.72 -24.19 5.56 -463.06 -2.57 -26.76 16 12 C 0.15 6.39 5.61 86.38 0.48 6.88 16 13 C -0.01 -0.48 4.16 29.85 0.12 -0.36 16 14 C -0.54 -31.94 9.66 25.60 0.25 -31.69 16 15 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 16 C 0.00 0.21 5.47 84.65 0.46 0.67 16 17 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 18 Si 0.96 42.86 27.47 68.60 1.88 44.74 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.41 10.70 8.47 -92.70 -0.79 9.91 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 33 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -79.37 292.12 2.67 -76.70 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.24 Total: 14.78 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.63 Total: -12.51 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.27 Total: -86.75 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.81 Total: -36.96 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -79.37 2.67 -76.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612060847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.269 kcal (2) G-P(sol) polarization free energy of solvation -79.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds