Wall clock time and date at job start Sun Mar 29 2020 21:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46921 * 2 1 4 4 C 1.46501 * 119.99452 * 258.93875 * 3 2 1 5 5 C 1.50707 * 109.47081 * 269.99701 * 4 3 2 6 6 H 1.07998 * 119.99618 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99687 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99776 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00228 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46940 * 90.00012 * 9 7 5 11 11 H 1.48499 * 109.46881 * 209.99714 * 9 7 5 12 12 H 1.48498 * 109.47329 * 329.99919 * 9 7 5 13 13 C 1.34769 * 120.00044 * 78.93860 * 3 2 1 14 14 O 1.21284 * 119.99956 * 173.16980 * 13 3 2 15 15 C 1.50700 * 120.00287 * 353.45102 * 13 3 2 16 16 O 1.42894 * 112.84997 * 47.70117 * 15 13 3 17 17 C 1.53784 * 113.61182 * 276.51282 * 15 13 3 18 18 C 1.53957 * 87.01665 * 220.04480 * 17 15 13 19 19 C 1.53774 * 87.11176 * 25.36227 * 18 17 15 20 20 H 1.09003 * 109.47212 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46784 * 299.99916 * 1 2 3 22 22 H 1.08993 * 109.47411 * 60.00200 * 1 2 3 23 23 H 1.09003 * 109.46784 * 240.00084 * 2 1 3 24 24 H 1.08998 * 109.47228 * 120.00228 * 2 1 3 25 25 H 1.09002 * 109.47553 * 29.99999 * 4 3 2 26 26 H 1.09000 * 109.46910 * 150.00480 * 4 3 2 27 27 H 0.96996 * 120.00250 * 179.97438 * 8 7 5 28 28 H 0.96700 * 114.00574 * 279.07403 * 16 15 13 29 29 H 1.09004 * 113.60936 * 334.56226 * 17 15 13 30 30 H 1.08991 * 113.61754 * 105.46844 * 17 15 13 31 31 H 1.08994 * 113.53549 * 270.80830 * 18 17 15 32 32 H 1.09002 * 113.73753 * 139.94310 * 18 17 15 33 33 H 1.09003 * 113.61323 * 220.08785 * 19 18 17 34 34 H 1.09005 * 113.69308 * 89.19859 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4919 1.9906 -1.2452 5 6 3.9691 1.7349 -1.3996 6 1 4.5016 1.1741 -0.6457 7 6 4.6405 2.2168 -2.5032 8 7 5.9294 1.9932 -2.6381 9 14 3.7194 3.1873 -3.8067 10 1 3.7533 4.6320 -3.4644 11 1 4.3634 2.9764 -5.1280 12 1 2.3093 2.7251 -3.8638 13 6 2.0318 2.0912 1.1454 14 8 2.5488 3.1880 1.1731 15 6 1.4101 1.5197 2.3936 16 8 1.8130 0.1725 2.6474 17 6 -0.1104 1.7341 2.4781 18 6 0.0947 2.0236 3.9763 19 6 1.5313 2.4403 3.6194 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.9575 1.5547 -2.0894 26 1 2.3104 3.0650 -1.2159 27 1 6.4017 2.3319 -3.4147 28 1 1.3275 -0.4869 2.1331 29 1 -0.4619 2.5961 1.9110 30 1 -0.6901 0.8322 2.2822 31 1 0.0412 1.1335 4.6029 32 1 -0.5170 2.8436 4.3525 33 1 2.2750 2.1076 4.3435 34 1 1.6309 3.4955 3.3648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612426428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:38 Heat of formation + Delta-G solvation = -36.909918 kcal Electronic energy + Delta-G solvation = -16777.398649 eV Core-core repulsion = 14098.395813 eV Total energy + Delta-G solvation = -2679.002835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59802 -37.55103 -35.90659 -34.30371 -32.65065 -30.49764 -28.08056 -26.00356 -25.66744 -22.94147 -22.34596 -19.90783 -19.33520 -16.96063 -16.64811 -16.32447 -16.14892 -15.10272 -14.48124 -14.42936 -13.60517 -13.30184 -13.13071 -12.50942 -12.43355 -12.27017 -12.07990 -11.97287 -11.65671 -11.39095 -11.11292 -10.98456 -10.57444 -10.52998 -10.36341 -10.17268 -10.10059 -9.50797 -8.65640 -8.57422 -7.72570 -6.06391 -4.04933 3.08686 3.28772 3.34637 3.36091 3.78362 4.17576 4.40297 4.47780 4.57423 4.78873 4.85327 5.12736 5.25784 5.38994 5.43824 5.48453 5.70151 5.75040 5.78020 5.90553 6.03290 6.06923 6.10502 6.30463 6.41018 6.69669 6.90529 7.33620 7.52942 7.62581 8.23696 8.49076 8.91448 8.99883 9.53419 11.07222 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038211 B = 0.008212 C = 0.007824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.604436 B = 3408.831149 C = 3577.915053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.086 3.914 3 N -0.587 5.587 4 C 0.215 3.785 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.501 3.499 14 O -0.530 6.530 15 C 0.089 3.911 16 O -0.534 6.534 17 C -0.162 4.162 18 C -0.136 4.136 19 C -0.111 4.111 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.380 0.620 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.899 -4.127 8.718 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.038 4.038 3 N -0.318 5.318 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.286 3.714 14 O -0.406 6.406 15 C 0.045 3.955 16 O -0.346 6.346 17 C -0.199 4.199 18 C -0.173 4.173 19 C -0.148 4.148 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.234 0.766 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.055 -3.233 8.970 16.984 hybrid contribution -0.598 0.082 -1.358 1.486 sum -14.654 -3.151 7.611 16.810 Atomic orbital electron populations 1.22839 0.97057 1.02282 1.03845 1.21884 0.93217 0.84428 1.04248 1.47926 1.61707 1.12554 1.09611 1.19686 0.95880 0.94185 0.80787 1.21346 0.91767 1.35731 1.07676 0.90684 1.24872 0.94756 0.95604 0.97854 1.69901 1.08000 1.46142 1.29556 0.86854 0.80266 0.81262 0.81303 1.19939 1.21029 1.19155 1.20692 0.80072 0.86005 0.84600 1.90667 1.43877 1.21617 1.84463 1.22568 0.94481 0.84164 0.94324 1.86634 1.65012 1.14128 1.68817 1.23822 0.94867 1.03167 0.98077 1.22857 0.97094 1.01759 0.95627 1.22899 0.97168 0.99727 0.95040 0.91706 0.91012 0.92001 0.89351 0.89977 0.95283 0.94886 0.92587 0.76619 0.88730 0.89424 0.89688 0.90917 0.90197 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.35 9.50 37.16 0.35 -1.99 16 2 C 0.09 1.34 5.73 -4.04 -0.02 1.32 16 3 N -0.59 -12.33 2.49 -175.05 -0.44 -12.76 16 4 C 0.22 5.37 4.13 -5.19 -0.02 5.35 16 5 C -0.53 -15.59 9.94 -34.44 -0.34 -15.93 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.50 10.63 6.95 -10.99 -0.08 10.55 16 14 O -0.53 -13.50 15.55 5.55 0.09 -13.41 16 15 C 0.09 1.40 0.97 -90.96 -0.09 1.32 16 16 O -0.53 -7.95 12.21 -35.23 -0.43 -8.38 16 17 C -0.16 -1.90 5.66 -25.82 -0.15 -2.05 16 18 C -0.14 -1.47 8.02 -25.83 -0.21 -1.67 16 19 C -0.11 -1.60 7.24 -25.93 -0.19 -1.79 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.07 0.77 2.88 -51.93 -0.15 0.62 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.09 1.44 7.99 -51.93 -0.41 1.02 16 24 H 0.08 1.15 4.26 -51.93 -0.22 0.93 16 25 H 0.03 0.69 7.13 -51.93 -0.37 0.31 16 26 H 0.03 0.88 6.95 -51.93 -0.36 0.51 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.38 4.28 5.47 45.56 0.25 4.52 16 29 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 30 H 0.09 0.82 6.11 -51.93 -0.32 0.51 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.11 1.64 7.42 -51.93 -0.39 1.26 16 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -35.24 269.44 -5.55 -40.78 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.09 Total: 2.87 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.84 Total: -2.88 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.34 Total: -40.24 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.34 Total: -21.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.24 -5.55 -40.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612426428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.874 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds