Wall clock time and date at job start Sun Mar 29 2020 21:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34235 * 116.99914 * 2 1 4 4 O 1.20826 * 119.99856 * 5.12671 * 3 2 1 5 5 C 1.50694 * 120.00032 * 185.12789 * 3 2 1 6 6 C 1.53004 * 109.47353 * 177.54056 * 5 3 2 7 7 C 1.53001 * 115.54794 * 288.26481 * 6 5 3 8 8 N 1.46499 * 109.47080 * 186.83037 * 7 6 5 9 9 C 1.46493 * 120.00033 * 264.74493 * 8 7 6 10 10 C 1.36943 * 119.99883 * 84.74581 * 8 7 6 11 11 H 1.08000 * 119.99591 * 341.11385 * 10 8 7 12 12 C 1.38805 * 119.99684 * 160.83740 * 10 8 7 13 13 N 1.31619 * 120.00500 * 344.70146 * 12 10 8 14 14 Si 1.86800 * 119.99807 * 164.70050 * 12 10 8 15 15 H 1.48499 * 109.47389 * 90.00044 * 14 12 10 16 16 H 1.48502 * 109.47079 * 210.00146 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99885 * 14 12 10 18 18 C 1.52999 * 117.49780 * 73.92827 * 6 5 3 19 19 C 1.52994 * 117.50150 * 142.59082 * 6 5 3 20 20 H 1.08999 * 109.47836 * 64.14538 * 1 2 3 21 21 H 1.09004 * 109.47217 * 184.14594 * 1 2 3 22 22 H 1.09002 * 109.47616 * 304.14353 * 1 2 3 23 23 H 1.09004 * 109.47372 * 57.53745 * 5 3 2 24 24 H 1.09003 * 109.47206 * 297.54123 * 5 3 2 25 25 H 1.08997 * 109.47783 * 66.82438 * 7 6 5 26 26 H 1.09002 * 109.46551 * 306.82668 * 7 6 5 27 27 H 1.08996 * 109.47525 * 267.18073 * 9 8 7 28 28 H 1.09000 * 109.47117 * 27.18424 * 9 8 7 29 29 H 1.09000 * 109.47405 * 147.17970 * 9 8 7 30 30 H 0.96995 * 120.00599 * 179.97438 * 13 12 10 31 31 H 1.08998 * 117.50067 * 215.00773 * 18 6 5 32 32 H 1.09006 * 117.49763 * 0.02637 * 18 6 5 33 33 H 1.09006 * 117.49977 * 359.97438 * 19 6 5 34 34 H 1.08996 * 117.50122 * 144.99889 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4069 2.2075 0.0935 5 6 3.5615 1.2773 -0.1166 6 6 3.9915 2.7452 -0.1534 7 6 3.6616 3.4973 -1.4443 8 7 4.2701 4.8293 -1.4025 9 6 3.4840 5.9799 -0.9505 10 6 5.5738 4.9989 -1.7860 11 1 6.2400 4.1498 -1.8248 12 6 6.0373 6.2612 -2.1303 13 7 5.1827 7.2301 -2.3817 14 14 7.8739 6.5847 -2.2367 15 1 8.3464 6.3070 -3.6169 16 1 8.1471 8.0041 -1.8963 17 1 8.5886 5.7003 -1.2816 18 6 3.9316 3.5319 1.1575 19 6 5.2850 3.1209 0.5723 20 1 -0.3635 0.4481 -0.9247 21 1 -0.3634 -1.0250 0.0743 22 1 -0.3634 0.5768 0.8505 23 1 3.8821 0.7818 -1.0331 24 1 4.0199 0.7858 0.7416 25 1 2.5804 3.5946 -1.5421 26 1 4.0553 2.9447 -2.2974 27 1 3.0229 6.4654 -1.8106 28 1 2.7073 5.6422 -0.2644 29 1 4.1367 6.6881 -0.4402 30 1 5.5066 8.1123 -2.6220 31 1 3.6572 4.5852 1.1003 32 1 3.5862 3.0035 2.0462 33 1 5.8295 2.3223 1.0763 34 1 5.9010 3.9038 0.1300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619648021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:39 Heat of formation + Delta-G solvation = -32.099694 kcal Electronic energy + Delta-G solvation = -16377.152362 eV Core-core repulsion = 13698.358114 eV Total energy + Delta-G solvation = -2678.794248 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31468 -37.95651 -36.09732 -34.31857 -30.86955 -29.96962 -27.40397 -26.29684 -25.71264 -21.77400 -21.61168 -20.76157 -18.27669 -17.33169 -16.67162 -16.31319 -16.21150 -15.07656 -14.53595 -13.85899 -13.55284 -13.31386 -13.14720 -12.69373 -12.10029 -12.01489 -11.65752 -11.27959 -11.05209 -10.86676 -10.69178 -10.65664 -10.62140 -10.32064 -10.18749 -9.91623 -9.61616 -9.44161 -8.86484 -8.44332 -6.69377 -5.66473 -3.07419 2.45187 2.86458 3.41417 3.48381 3.49670 4.52614 4.55595 5.02151 5.09504 5.15195 5.21822 5.29577 5.48644 5.52759 5.62623 5.71199 5.85657 5.93161 6.23288 6.38136 6.51449 6.70076 6.74514 6.85904 6.94448 7.01133 7.27052 7.50866 7.79844 7.88780 8.00075 8.45613 9.31151 9.96846 10.46006 11.39330 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049004 B = 0.006780 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.247750 B = 4128.895200 C = 4339.158261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.457 3.543 4 O -0.489 6.489 5 C -0.071 4.071 6 C -0.142 4.142 7 C 0.186 3.814 8 N -0.598 5.598 9 C 0.164 3.836 10 C -0.249 4.249 11 H 0.072 0.928 12 C -0.001 4.001 13 N -0.907 5.907 14 Si 0.900 3.100 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.280 1.280 18 C -0.159 4.159 19 C -0.165 4.165 20 H 0.060 0.940 21 H 0.095 0.905 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.022 0.978 28 H 0.001 0.999 29 H 0.046 0.954 30 H 0.251 0.749 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -12.899 5.496 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.299 3.701 4 O -0.375 6.375 5 C -0.109 4.109 6 C -0.145 4.145 7 C 0.058 3.942 8 N -0.320 5.320 9 C 0.020 3.980 10 C -0.378 4.378 11 H 0.090 0.910 12 C -0.199 4.199 13 N -0.553 5.553 14 Si 0.730 3.270 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.205 1.205 18 C -0.196 4.196 19 C -0.201 4.201 20 H 0.079 0.921 21 H 0.114 0.886 22 H 0.079 0.921 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.567 -12.375 5.485 14.636 hybrid contribution 0.715 0.246 -0.044 0.757 sum -4.852 -12.129 5.441 14.152 Atomic orbital electron populations 1.23177 0.77061 1.03114 1.02484 1.86513 1.22964 1.34383 1.84869 1.24049 0.92342 0.81013 0.72721 1.90685 1.66994 1.36175 1.43598 1.20929 0.86718 0.98426 1.04849 1.22229 1.03070 0.91581 0.97651 1.20170 0.96049 0.86515 0.91461 1.43853 1.10754 1.01893 1.75535 1.20807 0.92671 0.88806 0.95754 1.19176 0.85926 0.93898 1.38847 0.90982 1.24934 0.97479 0.97283 1.00239 1.70116 1.32097 1.02550 1.50507 0.86333 0.85690 0.77214 0.77776 1.21608 1.21733 1.20540 1.22778 1.01079 1.01202 0.94525 1.23352 0.90844 1.03562 1.02362 0.92074 0.88610 0.92057 0.87717 0.88503 0.93372 0.93951 0.96018 0.98098 0.93520 0.93881 0.88241 0.91220 0.91014 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.64 101.05 1.08 1.44 16 2 O -0.37 -4.87 10.57 -39.27 -0.41 -5.29 16 3 C 0.46 7.00 7.82 36.00 0.28 7.28 16 4 O -0.49 -9.04 14.41 -18.75 -0.27 -9.31 16 5 C -0.07 -1.01 5.70 -27.88 -0.16 -1.17 16 6 C -0.14 -2.58 1.57 -154.51 -0.24 -2.83 16 7 C 0.19 4.02 5.64 -4.04 -0.02 4.00 16 8 N -0.60 -15.15 2.19 -181.13 -0.40 -15.54 16 9 C 0.16 4.22 7.88 59.84 0.47 4.69 16 10 C -0.25 -6.72 7.51 -15.06 -0.11 -6.83 16 11 H 0.07 1.88 7.34 -52.49 -0.39 1.50 16 12 C 0.00 -0.04 5.05 -17.43 -0.09 -0.13 16 13 N -0.91 -26.79 10.63 55.49 0.59 -26.20 16 14 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.16 -2.96 9.25 -26.69 -0.25 -3.20 16 19 C -0.16 -3.03 9.41 -26.70 -0.25 -3.28 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.64 7.99 -51.93 -0.41 0.22 16 23 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.10 1.17 8.04 -51.93 -0.42 0.75 16 25 H 0.05 1.07 7.08 -51.93 -0.37 0.70 16 26 H 0.04 0.90 8.08 -51.93 -0.42 0.49 16 27 H 0.02 0.60 7.56 -51.93 -0.39 0.21 16 28 H 0.00 0.01 6.99 -51.93 -0.36 -0.35 16 29 H 0.05 1.27 6.98 -51.93 -0.36 0.91 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.10 2.09 5.73 -51.93 -0.30 1.80 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.13 2.83 5.14 -51.93 -0.27 2.57 16 LS Contribution 279.14 15.07 4.21 4.21 Total: -1.00 -30.97 279.14 -5.55 -36.52 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.94 Total: -1.12 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 0.70 Total: -0.03 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.19 Total: -41.74 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.69 Total: -14.60 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.97 -5.55 -36.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619648021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.415 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds