Wall clock time and date at job start Sun Mar 29 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46898 * 109.46865 * 2 1 4 4 C 1.46841 * 111.00117 * 308.17402 * 3 2 1 5 5 C 1.53045 * 109.52570 * 174.15993 * 4 3 2 6 6 C 1.53115 * 109.27534 * 59.18102 * 5 4 3 7 7 C 1.53116 * 109.16326 * 302.34910 * 6 5 4 8 8 C 1.46855 * 110.99846 * 183.96669 * 3 2 1 9 9 H 1.09000 * 109.46060 * 65.82708 * 8 3 2 10 10 C 1.50693 * 109.45317 * 305.84822 * 8 3 2 11 11 O 1.21209 * 120.00477 * 325.96342 * 10 8 3 12 12 O 1.34315 * 119.99955 * 145.96447 * 10 8 3 13 13 C 1.34924 * 117.00198 * 179.97438 * 12 10 8 14 14 H 1.08000 * 119.99943 * 0.02562 * 13 12 10 15 15 C 1.38748 * 120.00092 * 179.97438 * 13 12 10 16 16 N 1.31450 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00215 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47326 * 60.00009 * 17 15 13 19 19 H 1.48502 * 109.47132 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46931 * 299.99823 * 17 15 13 21 21 H 1.09008 * 109.47095 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47492 * 299.99689 * 1 2 3 23 23 H 1.09000 * 109.47540 * 60.00354 * 1 2 3 24 24 H 1.09003 * 109.47235 * 240.00065 * 2 1 3 25 25 H 1.09000 * 109.47540 * 119.99646 * 2 1 3 26 26 H 1.08997 * 109.46734 * 294.17860 * 4 3 2 27 27 H 1.09001 * 109.45967 * 54.14856 * 4 3 2 28 28 H 1.09002 * 109.50288 * 299.24172 * 5 4 3 29 29 H 1.08996 * 109.50306 * 179.12119 * 5 4 3 30 30 H 1.08994 * 109.52365 * 182.44324 * 6 5 4 31 31 H 1.08999 * 109.52403 * 62.25195 * 6 5 4 32 32 H 1.09003 * 109.50889 * 177.59643 * 7 6 5 33 33 H 1.09006 * 109.50302 * 297.71485 * 7 6 5 34 34 H 0.96997 * 120.00059 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.3961 2.1635 -1.0777 5 6 1.8163 3.6303 -0.9581 6 6 3.3416 3.7281 -1.0491 7 6 3.9670 2.8700 0.0541 8 6 3.4844 1.4253 -0.0948 9 1 3.7964 1.0363 -1.0641 10 6 4.0817 0.5809 1.0011 11 8 3.5336 0.5118 2.0800 12 8 5.2215 -0.0952 0.7824 13 6 5.7029 -0.8316 1.8054 14 1 5.1745 -0.8583 2.7470 15 6 6.8761 -1.5552 1.6475 16 7 7.5184 -1.5239 0.5010 17 14 7.5421 -2.5753 3.0635 18 1 6.5387 -3.5990 3.4511 19 1 8.7978 -3.2469 2.6420 20 1 7.8199 -1.6904 4.2233 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7179 1.7711 -2.0423 27 1 0.3115 2.0890 -0.9989 28 1 1.4827 4.0274 0.0006 29 1 1.3659 4.2050 -1.7673 30 1 3.6483 4.7662 -0.9209 31 1 3.6724 3.3672 -2.0229 32 1 5.0531 2.9015 -0.0319 33 1 3.6672 3.2551 1.0287 34 1 8.3387 -2.0295 0.3907 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741147404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:12 Heat of formation + Delta-G solvation = -83.437640 kcal Electronic energy + Delta-G solvation = -16488.946143 eV Core-core repulsion = 13807.925714 eV Total energy + Delta-G solvation = -2681.020429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71574 -37.97697 -34.97773 -34.09411 -32.11300 -31.01599 -29.40804 -25.76619 -24.47566 -23.54850 -21.07856 -20.35799 -19.13361 -17.67260 -16.74087 -15.73463 -14.88821 -14.61340 -14.46697 -14.43922 -14.10491 -13.35032 -13.31876 -13.08142 -12.73853 -12.20768 -11.58549 -11.53335 -11.43484 -11.20967 -11.03130 -10.92529 -10.63787 -10.50759 -10.44069 -10.11108 -10.05856 -9.76542 -8.80294 -8.53549 -7.96188 -6.37406 -4.05258 3.14999 3.20271 3.24365 3.52841 3.84099 4.17129 4.62713 4.97289 5.06649 5.17091 5.17387 5.39369 5.43617 5.51445 5.61695 5.69783 5.73385 5.81154 5.90604 6.03860 6.10346 6.13791 6.22223 6.35229 6.37170 6.46584 6.59255 6.74796 7.33789 7.38690 7.47727 7.99760 8.78740 9.11654 9.92994 10.80800 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036571 B = 0.007461 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.451383 B = 3752.134749 C = 4184.414690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 N -0.517 5.517 4 C 0.051 3.949 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.105 4.105 8 C 0.107 3.893 9 H 0.060 0.940 10 C 0.403 3.597 11 O -0.537 6.537 12 O -0.218 6.218 13 C -0.381 4.381 14 H 0.094 0.906 15 C 0.042 3.958 16 N -0.868 5.868 17 Si 0.943 3.057 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.270 1.270 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.029 0.971 25 H 0.090 0.910 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 6.634 -4.750 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.243 5.243 4 C -0.076 4.076 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.143 4.143 8 C -0.003 4.003 9 H 0.078 0.922 10 C 0.248 3.752 11 O -0.433 6.433 12 O -0.125 6.125 13 C -0.458 4.458 14 H 0.112 0.888 15 C -0.162 4.162 16 N -0.505 5.505 17 Si 0.767 3.233 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.195 1.195 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.406 6.712 -4.121 12.268 hybrid contribution 0.645 -0.951 -0.131 1.156 sum -8.760 5.761 -4.251 11.314 Atomic orbital electron populations 1.21849 0.95132 1.01497 1.01956 1.22207 0.95538 0.88886 1.01865 1.61729 1.04244 1.12742 1.45624 1.22205 0.99632 0.93784 0.92006 1.21611 0.95983 0.95700 1.02203 1.21578 0.95436 0.99800 0.98758 1.21512 1.00534 0.92166 1.00112 1.20958 0.87578 0.95600 0.96135 0.92214 1.22904 0.81928 0.81715 0.88673 1.90545 1.62212 1.63883 1.26626 1.83893 1.34627 1.52064 1.41914 1.21156 1.07398 1.24492 0.92706 0.88809 1.25314 0.95410 0.97352 0.98116 1.69989 1.16846 1.40049 1.23595 0.85760 0.78185 0.79451 0.79868 1.19525 1.20404 1.19491 0.92415 0.91802 0.92864 0.95238 0.89203 0.95138 0.90032 0.91008 0.91765 0.91560 0.92086 0.90589 0.90514 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.41 37.15 0.35 -1.63 16 2 C 0.04 0.74 5.32 -3.83 -0.02 0.72 16 3 N -0.52 -9.14 4.38 -228.08 -1.00 -10.13 16 4 C 0.05 0.70 5.03 -3.83 -0.02 0.68 16 5 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 6 C -0.12 -1.54 6.00 -26.61 -0.16 -1.70 16 7 C -0.11 -1.80 5.36 -26.65 -0.14 -1.94 16 8 C 0.11 2.13 2.33 -68.87 -0.16 1.97 16 9 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 10 C 0.40 10.30 5.88 36.00 0.21 10.51 16 11 O -0.54 -14.87 14.76 -19.05 -0.28 -15.15 16 12 O -0.22 -6.40 9.75 -20.73 -0.20 -6.60 16 13 C -0.38 -11.49 9.65 30.92 0.30 -11.19 16 14 H 0.09 2.84 6.86 -52.49 -0.36 2.48 16 15 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 16 N -0.87 -25.79 13.67 55.48 0.76 -25.03 16 17 Si 0.94 21.66 29.55 -169.99 -5.02 16.63 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.62 6.19 -51.93 -0.32 0.29 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 1.89 6.30 -51.93 -0.33 1.57 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.98 5.84 -51.93 -0.30 0.68 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 277.04 15.07 4.18 4.18 Total: -1.00 -32.87 277.04 -6.57 -39.44 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.10 Total: -0.27 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 0.10 Total: -3.05 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.24 Total: -35.16 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.48 Total: -21.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.87 -6.57 -39.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741147404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.996 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds