Wall clock time and date at job start Sun Mar 29 2020 21:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46898 * 109.46865 * 2 1 4 4 C 1.46841 * 111.00117 * 308.17402 * 3 2 1 5 5 C 1.53045 * 109.52570 * 174.15993 * 4 3 2 6 6 C 1.53115 * 109.27534 * 59.18102 * 5 4 3 7 7 C 1.53116 * 109.16326 * 302.34910 * 6 5 4 8 8 C 1.46855 * 110.99846 * 183.96669 * 3 2 1 9 9 H 1.09000 * 109.46060 * 65.82708 * 8 3 2 10 10 C 1.50693 * 109.45317 * 305.84822 * 8 3 2 11 11 O 1.21209 * 120.00477 * 325.96342 * 10 8 3 12 12 O 1.34315 * 119.99955 * 145.96447 * 10 8 3 13 13 C 1.34924 * 117.00198 * 179.97438 * 12 10 8 14 14 H 1.08000 * 119.99943 * 0.02562 * 13 12 10 15 15 C 1.38748 * 120.00092 * 179.97438 * 13 12 10 16 16 N 1.31450 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00215 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47326 * 60.00009 * 17 15 13 19 19 H 1.48502 * 109.47132 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46931 * 299.99823 * 17 15 13 21 21 H 1.09008 * 109.47095 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47492 * 299.99689 * 1 2 3 23 23 H 1.09000 * 109.47540 * 60.00354 * 1 2 3 24 24 H 1.09003 * 109.47235 * 240.00065 * 2 1 3 25 25 H 1.09000 * 109.47540 * 119.99646 * 2 1 3 26 26 H 1.08997 * 109.46734 * 294.17860 * 4 3 2 27 27 H 1.09001 * 109.45967 * 54.14856 * 4 3 2 28 28 H 1.09002 * 109.50288 * 299.24172 * 5 4 3 29 29 H 1.08996 * 109.50306 * 179.12119 * 5 4 3 30 30 H 1.08994 * 109.52365 * 182.44324 * 6 5 4 31 31 H 1.08999 * 109.52403 * 62.25195 * 6 5 4 32 32 H 1.09003 * 109.50889 * 177.59643 * 7 6 5 33 33 H 1.09006 * 109.50302 * 297.71485 * 7 6 5 34 34 H 0.96997 * 120.00059 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.3961 2.1635 -1.0777 5 6 1.8163 3.6303 -0.9581 6 6 3.3416 3.7281 -1.0491 7 6 3.9670 2.8700 0.0541 8 6 3.4844 1.4253 -0.0948 9 1 3.7964 1.0363 -1.0641 10 6 4.0817 0.5809 1.0011 11 8 3.5336 0.5118 2.0800 12 8 5.2215 -0.0952 0.7824 13 6 5.7029 -0.8316 1.8054 14 1 5.1745 -0.8583 2.7470 15 6 6.8761 -1.5552 1.6475 16 7 7.5184 -1.5239 0.5010 17 14 7.5421 -2.5753 3.0635 18 1 6.5387 -3.5990 3.4511 19 1 8.7978 -3.2469 2.6420 20 1 7.8199 -1.6904 4.2233 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7179 1.7711 -2.0423 27 1 0.3115 2.0890 -0.9989 28 1 1.4827 4.0274 0.0006 29 1 1.3659 4.2050 -1.7673 30 1 3.6483 4.7662 -0.9209 31 1 3.6724 3.3672 -2.0229 32 1 5.0531 2.9015 -0.0319 33 1 3.6672 3.2551 1.0287 34 1 8.3387 -2.0295 0.3907 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741147404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:11 Heat of formation + Delta-G solvation = -105.809945 kcal Electronic energy + Delta-G solvation = -16489.916279 eV Core-core repulsion = 13807.925714 eV Total energy + Delta-G solvation = -2681.990565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50329 -39.67265 -37.10367 -35.34523 -34.33156 -32.40553 -30.61604 -27.83081 -25.85283 -25.06357 -22.41920 -21.95336 -20.57610 -19.89304 -18.66786 -17.31914 -16.71629 -16.46263 -16.08198 -15.82465 -15.67987 -14.87742 -14.52539 -14.37621 -14.26955 -13.84138 -13.51754 -13.11651 -12.72188 -12.66963 -12.44927 -12.38984 -12.18044 -12.09748 -12.01394 -11.75640 -11.60259 -11.20877 -10.79330 -10.72247 -9.35713 -8.56793 -6.37421 1.27950 1.31037 1.47314 1.59877 2.04875 2.51047 2.91329 2.97380 3.80537 3.91248 3.91822 4.13219 4.16493 4.19997 4.35625 4.51403 4.56680 4.64878 4.72659 4.75434 4.90609 4.96908 5.06625 5.09848 5.11906 5.15142 5.19655 5.29420 5.46201 5.80065 5.90668 6.14583 6.64574 6.87907 7.75643 8.63922 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036571 B = 0.007461 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.451383 B = 3752.134749 C = 4184.414690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 N -0.527 5.527 4 C 0.046 3.954 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.103 4.103 8 C 0.113 3.887 9 H 0.059 0.941 10 C 0.401 3.599 11 O -0.564 6.564 12 O -0.248 6.248 13 C -0.423 4.423 14 H 0.079 0.921 15 C -0.003 4.003 16 N -0.903 5.903 17 Si 1.017 2.983 18 H -0.262 1.262 19 H -0.257 1.257 20 H -0.261 1.261 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 7.433 -5.562 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 N -0.255 5.255 4 C -0.080 4.080 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.142 4.142 8 C 0.004 3.996 9 H 0.076 0.924 10 C 0.248 3.752 11 O -0.460 6.460 12 O -0.156 6.156 13 C -0.499 4.499 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.541 5.541 17 Si 0.836 3.164 18 H -0.186 1.186 19 H -0.181 1.181 20 H -0.186 1.186 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.365 7.534 -4.957 13.739 hybrid contribution 0.875 -1.160 0.093 1.456 sum -9.490 6.374 -4.864 12.424 Atomic orbital electron populations 1.21783 0.91540 1.02803 1.03107 1.22180 0.98483 0.88764 0.99365 1.61781 1.02535 1.13076 1.48081 1.22448 1.00622 0.94110 0.90797 1.21646 0.95106 0.94822 1.03485 1.21584 0.96063 1.00061 0.97094 1.21550 1.00210 0.90923 1.01479 1.21045 0.89241 0.95988 0.93356 0.92367 1.24157 0.80529 0.80680 0.89847 1.90501 1.62555 1.64611 1.28378 1.83916 1.36417 1.53084 1.42221 1.21366 1.08899 1.26751 0.92839 0.90292 1.26551 0.94693 0.97718 1.01380 1.70073 1.17466 1.40782 1.25749 0.84699 0.78127 0.77630 0.75974 1.18637 1.18089 1.18565 0.91170 0.92114 0.90048 0.95599 0.93959 0.94299 0.87697 0.91456 0.88023 0.89101 0.91186 0.91751 0.91795 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.41 71.98 0.68 -2.73 16 2 C 0.04 1.42 5.32 86.30 0.46 1.88 16 3 N -0.53 -18.42 4.38 -875.52 -3.83 -22.26 16 4 C 0.05 1.13 5.03 86.33 0.43 1.56 16 5 C -0.11 -2.31 6.09 30.65 0.19 -2.12 16 6 C -0.11 -2.57 6.00 30.67 0.18 -2.39 16 7 C -0.10 -3.53 5.36 30.65 0.16 -3.36 16 8 C 0.11 4.62 2.33 44.19 0.10 4.72 16 9 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 10 C 0.40 21.62 5.88 71.23 0.42 22.04 16 11 O -0.56 -33.00 14.76 20.78 0.31 -32.69 16 12 O -0.25 -15.39 9.75 14.79 0.14 -15.25 16 13 C -0.42 -26.69 9.65 67.94 0.66 -26.04 16 14 H 0.08 5.06 6.86 -2.91 -0.02 5.04 16 15 C 0.00 -0.19 5.49 84.87 0.47 0.27 16 16 N -0.90 -54.68 13.67 21.62 0.30 -54.39 16 17 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.08 1.60 6.19 -2.39 -0.01 1.58 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 25 H 0.04 1.88 6.30 -2.39 -0.02 1.87 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 2.08 5.84 -2.39 -0.01 2.07 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.19 277.04 3.76 -71.43 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.07 Total: 12.74 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 3.75 Total: -6.18 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.54 Total: -76.64 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: 0.45 Total: -47.94 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.19 3.76 -71.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741147404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.381 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds