Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00274 * 2 1 4 4 O 1.20830 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00331 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47431 * 180.02562 * 5 3 2 7 7 C 1.53781 * 113.61609 * 175.00037 * 6 5 3 8 8 C 1.53781 * 87.08070 * 139.98229 * 7 6 5 9 9 N 1.46900 * 113.61428 * 219.93557 * 8 7 6 10 10 C 1.46895 * 110.99924 * 203.46824 * 9 8 7 11 11 C 1.50700 * 109.47106 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00413 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99896 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99943 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47399 * 59.99538 * 15 13 11 17 17 H 1.48505 * 109.46872 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46983 * 299.99041 * 15 13 11 19 19 C 1.53786 * 87.17350 * 334.52830 * 8 7 6 20 20 H 1.08998 * 109.47590 * 299.99788 * 1 2 3 21 21 H 1.09011 * 109.47076 * 59.99517 * 1 2 3 22 22 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47086 * 60.00219 * 5 3 2 24 24 H 1.09006 * 109.47329 * 300.00704 * 5 3 2 25 25 H 1.08996 * 112.84723 * 43.80856 * 6 5 3 26 26 H 1.08999 * 113.61181 * 25.43284 * 7 6 5 27 27 H 1.08998 * 113.61680 * 254.52836 * 7 6 5 28 28 H 1.09002 * 113.61445 * 89.11830 * 8 7 6 29 29 H 1.00902 * 110.99925 * 79.51829 * 9 8 7 30 30 H 1.08994 * 109.47448 * 300.00310 * 10 9 8 31 31 H 1.09001 * 109.47145 * 60.00387 * 10 9 8 32 32 H 0.96992 * 120.00048 * 180.02562 * 14 13 11 33 33 H 1.08992 * 113.61675 * 140.02412 * 19 8 7 34 34 H 1.09000 * 113.60973 * 270.92699 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5209 2.9347 0.1245 8 6 5.3818 4.0673 -0.9064 9 7 6.4695 4.1017 -1.8931 10 6 6.6135 5.4444 -2.4713 11 6 7.7357 5.4405 -3.4771 12 1 8.2872 4.5317 -3.6674 13 6 8.0592 6.5976 -4.1536 14 7 7.3880 7.7045 -3.9215 15 14 9.4498 6.5925 -5.4008 16 1 9.1434 5.6197 -6.4800 17 1 9.5954 7.9500 -5.9852 18 1 10.7159 6.2041 -4.7289 19 6 4.1167 3.3517 -1.4088 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5140 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.9564 0.7805 -0.8891 24 1 3.9557 0.7807 0.8908 25 1 3.4248 3.3532 0.6964 26 1 6.0994 2.0843 -0.2364 27 1 5.8391 3.2772 1.1091 28 1 5.1841 5.0420 -0.4602 29 1 6.3254 3.4109 -2.6144 30 1 5.6844 5.7288 -2.9652 31 1 6.8374 6.1590 -1.6793 32 1 7.6153 8.5183 -4.3977 33 1 3.3022 4.0305 -1.6612 34 1 4.3121 2.6152 -2.1882 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822476524.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = -76.968658 kcal Electronic energy + Delta-G solvation = -15310.917527 eV Core-core repulsion = 12630.177615 eV Total energy + Delta-G solvation = -2680.739913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63816 -38.80521 -36.53850 -34.08019 -32.12975 -30.28220 -27.67371 -26.15946 -25.30820 -22.83159 -21.53460 -20.34623 -19.29600 -17.60469 -16.76838 -16.61974 -16.28535 -15.22006 -14.59180 -14.48859 -14.04070 -13.68871 -13.22110 -12.58974 -12.51393 -12.32126 -12.11141 -12.00470 -11.46764 -11.18010 -11.01509 -10.95157 -10.71634 -10.60460 -10.52172 -10.21044 -10.00998 -9.69216 -9.10743 -8.45813 -7.21302 -6.00672 -4.02901 2.12951 2.59860 3.35087 3.38814 3.41910 4.44781 4.56346 4.71303 4.81775 4.88479 4.95970 5.05424 5.25173 5.28514 5.34795 5.40676 5.50438 5.51975 5.74318 6.04948 6.09287 6.17001 6.25441 6.35609 6.52760 6.75137 7.30197 7.47579 7.65463 7.81335 8.16376 8.44079 8.64990 9.06468 9.61890 11.10356 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061064 B = 0.004122 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.421680 B = 6791.918499 C = 6838.099120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.101 4.101 6 C -0.104 4.104 7 C -0.123 4.123 8 C 0.072 3.928 9 N -0.679 5.679 10 C 0.193 3.807 11 C -0.516 4.516 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.163 4.163 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.330 0.670 30 H -0.013 1.013 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 -14.790 8.327 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.390 6.390 5 C -0.138 4.138 6 C -0.123 4.123 7 C -0.161 4.161 8 C -0.040 4.040 9 N -0.307 5.307 10 C 0.066 3.934 11 C -0.555 4.555 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.202 4.202 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.147 0.853 30 H 0.005 0.995 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.435 -14.169 8.727 19.642 hybrid contribution -0.391 0.215 -1.287 1.362 sum -10.826 -13.954 7.440 19.165 Atomic orbital electron populations 1.23230 0.76686 1.03453 1.02524 1.86518 1.23261 1.34026 1.84395 1.24061 0.92554 0.81108 0.72110 1.90675 1.67243 1.36316 1.44815 1.21487 0.86611 1.00059 1.05670 1.22401 0.97586 0.92745 0.99536 1.23157 0.93169 0.99924 0.99845 1.22864 0.89175 0.97181 0.94785 1.60573 1.41824 1.09666 1.18646 1.19578 0.95443 0.84373 0.93978 1.21174 1.16682 0.96115 1.21484 0.92050 1.24998 0.96847 0.95473 0.97283 1.69953 1.40824 1.00434 1.42545 0.86541 0.82494 0.76920 0.81315 1.20287 1.21363 1.20150 1.23835 1.00412 1.00341 0.95626 0.92022 0.91945 0.88288 0.87536 0.87659 0.88465 0.89707 0.91591 0.89246 0.85250 0.99523 0.95466 0.92866 0.91737 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.94 10.56 -39.24 -0.41 -4.35 16 3 C 0.46 5.62 7.96 36.00 0.29 5.90 16 4 O -0.50 -7.71 15.51 -18.75 -0.29 -8.01 16 5 C -0.10 -1.04 5.65 -27.88 -0.16 -1.20 16 6 C -0.10 -1.33 3.16 -89.67 -0.28 -1.61 16 7 C -0.12 -1.69 7.44 -25.92 -0.19 -1.88 16 8 C 0.07 1.27 4.16 -66.90 -0.28 0.99 16 9 N -0.68 -14.55 6.60 -107.13 -0.71 -15.26 16 10 C 0.19 5.13 5.29 -4.98 -0.03 5.11 16 11 C -0.52 -14.80 9.32 -34.44 -0.32 -15.12 16 12 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 15 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.16 -2.50 7.27 -25.77 -0.19 -2.69 16 20 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 21 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.11 0.99 7.85 -51.93 -0.41 0.58 16 24 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 1.32 7.68 -51.93 -0.40 0.92 16 26 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.68 7.88 -51.93 -0.41 1.28 16 29 H 0.33 6.72 8.20 -39.29 -0.32 6.40 16 30 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 31 H 0.03 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.15 7.59 -51.93 -0.39 0.76 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -32.23 291.60 -6.77 -39.00 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.28 Total: 1.50 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.19 Total: -7.66 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.03 Total: -41.74 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.71 Total: -12.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.23 -6.77 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822476524.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.964 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds