Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00274 * 2 1 4 4 O 1.20830 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00331 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47431 * 180.02562 * 5 3 2 7 7 C 1.53781 * 113.61609 * 175.00037 * 6 5 3 8 8 C 1.53781 * 87.08070 * 139.98229 * 7 6 5 9 9 N 1.46900 * 113.61428 * 219.93557 * 8 7 6 10 10 C 1.46895 * 110.99924 * 203.46824 * 9 8 7 11 11 C 1.50700 * 109.47106 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00413 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99896 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99943 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47399 * 59.99538 * 15 13 11 17 17 H 1.48505 * 109.46872 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46983 * 299.99041 * 15 13 11 19 19 C 1.53786 * 87.17350 * 334.52830 * 8 7 6 20 20 H 1.08998 * 109.47590 * 299.99788 * 1 2 3 21 21 H 1.09011 * 109.47076 * 59.99517 * 1 2 3 22 22 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47086 * 60.00219 * 5 3 2 24 24 H 1.09006 * 109.47329 * 300.00704 * 5 3 2 25 25 H 1.08996 * 112.84723 * 43.80856 * 6 5 3 26 26 H 1.08999 * 113.61181 * 25.43284 * 7 6 5 27 27 H 1.08998 * 113.61680 * 254.52836 * 7 6 5 28 28 H 1.09002 * 113.61445 * 89.11830 * 8 7 6 29 29 H 1.00902 * 110.99925 * 79.51829 * 9 8 7 30 30 H 1.08994 * 109.47448 * 300.00310 * 10 9 8 31 31 H 1.09001 * 109.47145 * 60.00387 * 10 9 8 32 32 H 0.96992 * 120.00048 * 180.02562 * 14 13 11 33 33 H 1.08992 * 113.61675 * 140.02412 * 19 8 7 34 34 H 1.09000 * 113.60973 * 270.92699 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5209 2.9347 0.1245 8 6 5.3818 4.0673 -0.9064 9 7 6.4695 4.1017 -1.8931 10 6 6.6135 5.4444 -2.4713 11 6 7.7357 5.4405 -3.4771 12 1 8.2872 4.5317 -3.6674 13 6 8.0592 6.5976 -4.1536 14 7 7.3880 7.7045 -3.9215 15 14 9.4498 6.5925 -5.4008 16 1 9.1434 5.6197 -6.4800 17 1 9.5954 7.9500 -5.9852 18 1 10.7159 6.2041 -4.7289 19 6 4.1167 3.3517 -1.4088 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5140 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.9564 0.7805 -0.8891 24 1 3.9557 0.7807 0.8908 25 1 3.4248 3.3532 0.6964 26 1 6.0994 2.0843 -0.2364 27 1 5.8391 3.2772 1.1091 28 1 5.1841 5.0420 -0.4602 29 1 6.3254 3.4109 -2.6144 30 1 5.6844 5.7288 -2.9652 31 1 6.8374 6.1590 -1.6793 32 1 7.6153 8.5183 -4.3977 33 1 3.3022 4.0305 -1.6612 34 1 4.3121 2.6152 -2.1882 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822476524.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = -98.850054 kcal Electronic energy + Delta-G solvation = -15311.866376 eV Core-core repulsion = 12630.177615 eV Total energy + Delta-G solvation = -2681.688761 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58933 -40.04108 -37.49569 -35.95312 -34.03179 -31.47104 -28.72848 -27.86882 -26.52157 -24.39379 -23.19021 -21.51843 -20.48082 -18.59322 -18.43085 -17.63071 -17.48043 -16.81813 -16.21344 -16.01930 -15.28123 -14.70616 -14.56069 -14.31258 -13.81187 -13.55058 -13.31100 -13.17601 -12.96586 -12.85875 -12.64261 -12.41020 -12.18708 -11.80449 -11.69067 -11.66799 -11.48775 -11.20683 -10.96690 -10.65077 -9.00562 -8.21879 -6.34044 1.21268 1.41687 1.45863 1.53813 1.80699 2.40826 3.11015 3.53941 3.58151 3.67213 3.93501 4.01336 4.20873 4.30864 4.31500 4.36395 4.53605 4.68400 4.71630 4.84078 4.86629 4.96556 5.08635 5.15277 5.23934 5.34775 5.41768 5.52879 5.65979 6.03599 6.49812 6.75251 6.76051 6.92670 7.37404 8.89595 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061064 B = 0.004122 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.421680 B = 6791.918499 C = 6838.099120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.544 6.544 5 C -0.095 4.095 6 C -0.087 4.087 7 C -0.102 4.102 8 C 0.049 3.951 9 N -0.674 5.674 10 C 0.208 3.792 11 C -0.538 4.538 12 H 0.068 0.932 13 C -0.002 4.002 14 N -0.937 5.937 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.161 4.161 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.132 0.868 23 H 0.126 0.874 24 H 0.139 0.861 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.337 0.663 30 H -0.044 1.044 31 H -0.004 1.004 32 H 0.265 0.735 33 H 0.042 0.958 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.957 -17.214 8.321 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.434 6.434 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.062 4.062 9 N -0.303 5.303 10 C 0.080 3.920 11 C -0.576 4.576 12 H 0.086 0.914 13 C -0.200 4.200 14 N -0.577 5.577 15 Si 0.800 3.200 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.200 4.200 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.150 0.850 23 H 0.144 0.856 24 H 0.157 0.843 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.156 0.844 30 H -0.026 1.026 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.696 -16.641 8.740 21.150 hybrid contribution -0.722 0.958 -1.244 1.728 sum -10.418 -15.683 7.496 20.265 Atomic orbital electron populations 1.23504 0.75282 1.05572 1.02218 1.86508 1.24676 1.33082 1.83853 1.24421 0.93271 0.80913 0.70957 1.90672 1.68223 1.37617 1.46854 1.21503 0.85430 0.98117 1.08174 1.22182 0.96876 0.94560 0.96967 1.23035 0.94006 0.98227 0.98768 1.23086 0.89666 0.98016 0.95463 1.60512 1.44061 1.06959 1.18774 1.19203 0.93678 0.86545 0.92582 1.21568 1.17279 0.96613 1.22105 0.91417 1.26025 0.99647 0.94887 0.99432 1.70099 1.42624 1.01211 1.43770 0.85335 0.78857 0.77260 0.78536 1.18941 1.20936 1.19113 1.23807 0.98183 1.00129 0.97860 0.92101 0.92579 0.84977 0.85632 0.84347 0.89407 0.87979 0.90518 0.91575 0.84441 1.02603 0.98627 0.92643 0.93892 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.03 10.56 -51.35 -0.54 -7.58 16 3 C 0.46 10.41 7.96 71.23 0.57 10.97 16 4 O -0.54 -16.41 15.51 21.95 0.34 -16.07 16 5 C -0.10 -1.66 5.65 29.85 0.17 -1.49 16 6 C -0.09 -2.09 3.16 -10.18 -0.03 -2.12 16 7 C -0.10 -2.60 7.44 31.12 0.23 -2.37 16 8 C 0.05 1.74 4.16 45.44 0.19 1.92 16 9 N -0.67 -29.20 6.60 -492.86 -3.25 -32.45 16 10 C 0.21 11.51 5.29 85.56 0.45 11.96 16 11 C -0.54 -31.22 9.32 25.60 0.24 -30.98 16 12 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 13 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 14 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 15 Si 0.98 44.71 29.54 68.60 2.03 46.74 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 C -0.16 -4.91 7.27 31.21 0.23 -4.68 16 20 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 21 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 22 H 0.13 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.13 1.81 7.85 -2.39 -0.02 1.79 16 24 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.09 2.32 7.68 -2.39 -0.02 2.30 16 26 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 2.64 7.88 -2.39 -0.02 2.62 16 29 H 0.34 13.62 8.20 -89.69 -0.74 12.89 16 30 H -0.04 -2.63 8.14 -2.39 -0.02 -2.65 16 31 H 0.00 -0.27 8.13 -2.39 -0.02 -0.29 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 2.56 7.59 -2.39 -0.02 2.54 16 Total: -1.00 -71.28 291.60 2.90 -68.38 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.34 Total: 13.55 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.70 Total: -14.85 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -2.97 Total: -90.18 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.20 Total: -23.64 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.28 2.90 -68.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822476524.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.467 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds