Wall clock time and date at job start Sun Mar 29 2020 22:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.46881 * 2 1 4 4 N 1.27942 * 120.00413 * 229.60194 * 3 2 1 5 5 Si 1.86804 * 119.99896 * 49.60315 * 3 2 1 6 6 H 1.48498 * 109.47116 * 60.00137 * 5 3 2 7 7 H 1.48502 * 109.47091 * 179.97438 * 5 3 2 8 8 H 1.48495 * 109.47294 * 299.99593 * 5 3 2 9 9 N 1.46899 * 109.47222 * 240.00566 * 2 1 3 10 10 C 1.46895 * 111.00513 * 50.40671 * 9 2 1 11 11 Si 1.86302 * 109.47305 * 150.27412 * 10 9 2 12 12 C 1.86299 * 109.46818 * 60.00289 * 11 10 9 13 13 C 1.86303 * 109.47066 * 180.02562 * 11 10 9 14 14 C 1.86296 * 109.46902 * 300.00236 * 11 10 9 15 15 C 1.46904 * 110.99779 * 286.45382 * 9 2 1 16 16 C 1.53003 * 117.49782 * 1.28697 * 15 9 2 17 17 C 1.53005 * 117.49848 * 292.62969 * 15 9 2 18 18 H 1.08998 * 109.47603 * 293.76825 * 1 2 3 19 19 H 1.09006 * 109.47461 * 53.77359 * 1 2 3 20 20 H 1.09006 * 109.46977 * 173.77103 * 1 2 3 21 21 H 1.08994 * 109.47523 * 119.99891 * 2 1 3 22 22 H 0.97000 * 120.00622 * 185.00848 * 4 3 2 23 23 H 1.09004 * 109.47533 * 270.27999 * 10 9 2 24 24 H 1.09008 * 109.46837 * 30.27301 * 10 9 2 25 25 H 1.08995 * 109.47040 * 60.00273 * 12 11 10 26 26 H 1.09000 * 109.46699 * 179.97438 * 12 11 10 27 27 H 1.08995 * 109.47215 * 299.99576 * 12 11 10 28 28 H 1.09008 * 109.47071 * 59.99892 * 13 11 10 29 29 H 1.08993 * 109.46998 * 179.97438 * 13 11 10 30 30 H 1.08992 * 109.47105 * 300.00464 * 13 11 10 31 31 H 1.08995 * 109.47488 * 60.00205 * 14 11 10 32 32 H 1.09007 * 109.47107 * 180.02562 * 14 11 10 33 33 H 1.08996 * 109.47442 * 299.99430 * 14 11 10 34 34 H 1.08997 * 115.55217 * 146.95917 * 15 9 2 35 35 H 1.09005 * 117.49892 * 0.02562 * 16 15 9 36 36 H 1.09003 * 117.49818 * 145.01912 * 16 15 9 37 37 H 1.09003 * 117.49658 * 214.98028 * 17 15 9 38 38 H 1.08997 * 117.49630 * 359.97336 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.9225 1.7847 -0.8438 5 14 1.3550 2.6509 1.2321 6 1 1.6303 2.1731 2.6109 7 1 2.0079 3.9686 1.0258 8 1 -0.1109 2.7887 1.0393 9 7 2.0196 -0.6924 -1.1995 10 6 1.3711 -0.1710 -2.4100 11 14 2.5329 -0.3359 -3.8571 12 6 2.9624 -2.1314 -4.1070 13 6 1.7107 0.3261 -5.3922 14 6 4.0875 0.6333 -3.5188 15 6 1.8289 -2.1444 -1.0839 16 6 1.1575 -2.6698 0.1866 17 6 2.6573 -2.8842 -0.0316 18 1 -0.3634 0.4142 0.9405 19 1 -0.3634 0.6073 -0.8290 20 1 -0.3633 -1.0217 -0.1115 21 1 1.8933 -0.5138 0.8899 22 1 3.2985 2.6777 -0.7975 23 1 0.4615 -0.7380 -2.6079 24 1 1.1198 0.8796 -2.2638 25 1 2.0528 -2.6984 -4.3049 26 1 3.6418 -2.2279 -4.9539 27 1 3.4436 -2.5183 -3.2088 28 1 1.4597 1.3767 -5.2456 29 1 2.3906 0.2300 -6.2387 30 1 0.8009 -0.2406 -5.5902 31 1 4.5688 0.2464 -2.6206 32 1 4.7671 0.5372 -4.3657 33 1 3.8363 1.6838 -3.3726 34 1 1.6184 -2.6667 -2.0172 35 1 0.8569 -1.9380 0.9365 36 1 0.5056 -3.5379 0.0892 37 1 2.9916 -3.8934 -0.2725 38 1 3.3442 -2.2936 0.5746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852479833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:27 Heat of formation + Delta-G solvation = 41.231692 kcal Electronic energy + Delta-G solvation = -15292.556469 eV Core-core repulsion = 13102.325910 eV Total energy + Delta-G solvation = -2190.230558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44061 -36.71302 -34.10173 -31.45723 -29.33214 -28.27812 -28.08758 -26.40997 -24.68195 -23.08943 -21.98810 -19.45805 -17.93568 -17.19737 -16.33815 -15.46818 -14.97104 -14.28785 -14.21737 -14.07966 -13.88283 -13.79700 -13.61862 -13.47879 -13.28664 -13.12677 -13.00532 -12.81478 -12.63000 -12.47222 -12.40913 -12.17514 -11.93348 -11.58137 -11.18333 -11.02702 -10.60892 -10.59347 -10.48886 -9.60583 -8.64760 0.94556 1.12315 1.41448 1.79461 1.85236 2.02664 2.17295 2.23696 2.94382 2.98105 3.34274 3.63533 4.06397 4.16746 4.19984 4.31941 4.41007 4.66896 4.80253 4.82972 4.84270 4.85879 4.90305 4.92669 4.96645 5.06898 5.08648 5.09850 5.17420 5.21323 5.26066 5.34116 5.39101 5.59486 5.71963 5.93748 6.20074 6.37865 7.12939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.094 3.906 3 C -0.007 4.007 4 N -0.610 5.610 5 Si 0.956 3.044 6 H -0.244 1.244 7 H -0.263 1.263 8 H -0.240 1.240 9 N -0.463 5.463 10 C -0.236 4.236 11 Si 1.087 2.913 12 C -0.458 4.458 13 C -0.467 4.467 14 C -0.435 4.435 15 C 0.010 3.990 16 C -0.219 4.219 17 C -0.179 4.179 18 H 0.071 0.929 19 H 0.062 0.938 20 H 0.079 0.921 21 H 0.108 0.892 22 H 0.335 0.665 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -0.276 1.206 2.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.015 4.015 3 C -0.256 4.256 4 N -0.223 5.223 5 Si 0.773 3.227 6 H -0.167 1.167 7 H -0.187 1.187 8 H -0.163 1.163 9 N -0.184 5.184 10 C -0.409 4.409 11 Si 1.277 2.723 12 C -0.564 4.564 13 C -0.573 4.573 14 C -0.541 4.541 15 C -0.099 4.099 16 C -0.258 4.258 17 C -0.217 4.217 18 H 0.090 0.910 19 H 0.081 0.919 20 H 0.098 0.902 21 H 0.126 0.874 22 H 0.151 0.849 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.625 -0.021 0.945 1.880 hybrid contribution -0.735 0.461 0.437 0.971 sum -2.360 0.440 1.382 2.770 Atomic orbital electron populations 1.22647 0.95376 1.03985 1.03118 1.21263 0.93590 0.91034 0.95631 1.30408 0.95372 1.01320 0.98508 1.68261 1.08192 1.23029 1.22794 0.85421 0.81353 0.76925 0.78981 1.16671 1.18733 1.16288 1.62159 1.54912 1.00415 1.00934 1.27285 1.06476 1.02424 1.04749 0.78076 0.65784 0.65670 0.62762 1.26325 1.04955 1.20727 1.04411 1.26366 1.07846 1.06473 1.16657 1.26068 1.15965 1.08735 1.03356 1.22939 1.03623 0.88897 0.94427 1.23797 0.95853 1.04355 1.01794 1.23099 0.94003 1.01414 1.03137 0.90997 0.91891 0.90227 0.87442 0.84853 0.93259 0.90380 0.91401 0.91931 0.91083 0.91637 0.91517 0.91264 0.91654 0.93419 0.92042 0.85836 0.87259 0.88567 0.88406 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 0.60 7.00 71.98 0.50 1.11 16 2 C 0.09 -0.11 1.98 44.17 0.09 -0.02 16 3 C -0.01 0.00 4.57 88.67 0.41 0.41 16 4 N -0.61 -0.76 11.39 24.11 0.27 -0.49 16 5 Si 0.96 -2.04 27.68 68.60 1.90 -0.14 16 6 H -0.24 0.29 7.11 99.48 0.71 0.99 16 7 H -0.26 0.00 7.11 99.48 0.71 0.70 16 8 H -0.24 0.41 7.11 99.48 0.71 1.12 16 9 N -0.46 -0.05 3.57 -645.71 -2.31 -2.36 16 10 C -0.24 0.19 2.36 127.69 0.30 0.49 16 11 Si 1.09 -1.70 12.35 68.60 0.85 -0.86 16 12 C -0.46 0.17 7.44 113.37 0.84 1.02 16 13 C -0.47 0.18 8.65 113.37 0.98 1.16 16 14 C -0.43 -1.17 8.10 113.37 0.92 -0.25 16 15 C 0.01 -0.01 4.57 44.92 0.21 0.20 16 16 C -0.22 0.48 8.03 30.62 0.25 0.72 16 17 C -0.18 0.09 10.05 30.62 0.31 0.40 16 18 H 0.07 -0.37 6.84 -2.39 -0.02 -0.38 16 19 H 0.06 -0.15 6.86 -2.38 -0.02 -0.16 16 20 H 0.08 -0.27 5.68 -2.38 -0.01 -0.28 16 21 H 0.11 -0.23 6.02 -2.39 -0.01 -0.24 16 22 H 0.33 -0.31 8.24 -92.71 -0.76 -1.07 16 23 H 0.05 -0.10 7.60 -2.39 -0.02 -0.12 16 24 H 0.08 -0.01 5.81 -2.38 -0.01 -0.02 16 25 H 0.07 -0.11 7.92 -2.39 -0.02 -0.12 16 26 H 0.06 0.01 7.96 -2.39 -0.02 0.00 16 27 H 0.07 0.06 7.09 -2.39 -0.02 0.04 16 28 H 0.06 0.00 7.96 -2.38 -0.02 -0.02 16 29 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 30 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 31 H 0.06 0.36 7.96 -2.39 -0.02 0.34 16 32 H 0.05 0.13 7.96 -2.38 -0.02 0.11 16 33 H 0.06 0.20 7.75 -2.39 -0.02 0.19 16 34 H 0.12 -0.21 6.27 -2.39 -0.01 -0.23 16 35 H 0.11 -0.36 4.82 -2.38 -0.01 -0.37 16 36 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.10 -0.13 8.14 -2.39 -0.02 -0.14 16 38 H 0.09 0.07 7.99 -2.39 -0.02 0.05 16 Total: 0.00 -5.17 292.01 6.52 1.36 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: 1.01 Total: -0.03 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 4.80 Total: 5.23 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -2.03 Total: -2.85 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.75 Total: -0.99 kcal Total: -5.17 6.52 1.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852479833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.875 kcal (2) G-P(sol) polarization free energy of solvation -5.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds