Wall clock time and date at job start Sun Mar 29 2020 22:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.53620 * 2 1 4 4 C 1.53113 * 109.50538 * 120.09978 * 2 1 3 5 5 C 1.53121 * 109.16254 * 177.59380 * 4 2 1 6 6 H 1.09003 * 109.53342 * 62.30843 * 5 4 2 7 7 O 1.42904 * 109.50312 * 182.40345 * 5 4 2 8 8 C 1.53035 * 109.28081 * 302.34442 * 5 4 2 9 9 N 1.46855 * 109.52100 * 59.17548 * 8 5 4 10 10 C 1.46898 * 110.99918 * 174.16012 * 9 8 5 11 11 C 1.53006 * 109.47006 * 66.04727 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 C 1.46842 * 111.19787 * 298.25950 * 9 8 5 21 21 H 1.09000 * 109.47229 * 299.89994 * 1 2 3 22 22 H 1.09003 * 109.47312 * 59.90415 * 1 2 3 23 23 H 1.09003 * 109.47290 * 179.90169 * 1 2 3 24 24 H 1.09005 * 109.47394 * 180.10203 * 3 2 1 25 25 H 1.09007 * 109.47167 * 300.10012 * 3 2 1 26 26 H 1.08996 * 109.47222 * 60.10000 * 3 2 1 27 27 H 1.08998 * 109.52565 * 57.69037 * 4 2 1 28 28 H 1.09000 * 109.52445 * 297.50170 * 4 2 1 29 29 H 0.96704 * 113.99712 * 179.80773 * 7 5 4 30 30 H 1.08999 * 109.46043 * 299.16566 * 8 5 4 31 31 H 1.08998 * 109.46830 * 179.19402 * 8 5 4 32 32 H 1.09001 * 109.47062 * 306.04981 * 10 9 8 33 33 H 1.08993 * 109.47084 * 186.04428 * 10 9 8 34 34 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 35 35 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 36 36 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46027 * 181.75431 * 20 9 8 38 38 H 1.08993 * 109.46620 * 301.72357 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0412 -0.7238 1.2486 5 6 3.5712 -0.7720 1.2106 6 1 3.9683 0.2430 1.2301 7 8 4.0541 -1.4950 2.3447 8 6 4.0229 -1.4730 -0.0725 9 7 3.5091 -0.7421 -1.2380 10 6 4.0371 -1.3058 -2.4876 11 6 3.4928 -2.7231 -2.6777 12 6 4.0339 -3.3012 -3.9599 13 1 4.6998 -2.7164 -4.5772 14 6 3.6797 -4.5770 -4.3444 15 7 2.8692 -5.2892 -3.5925 16 14 4.3511 -5.2938 -5.9334 17 1 5.8341 -5.3372 -5.8691 18 1 3.8236 -6.6698 -6.1174 19 1 3.9298 -4.4446 -7.0764 20 6 2.0409 -0.7235 -1.2481 21 1 -0.3634 0.5123 0.8909 22 1 -0.3634 0.5153 -0.8891 23 1 -0.3634 -1.0277 -0.0018 24 1 3.1316 1.4407 -0.0018 25 1 1.6773 1.9567 -0.8891 26 1 1.6803 1.9556 0.8908 27 1 1.6452 -1.7391 1.2689 28 1 1.7156 -0.1871 2.1397 29 1 5.0176 -1.5677 2.3837 30 1 3.6374 -2.4925 -0.0843 31 1 5.1120 -1.4963 -0.1096 32 1 5.1256 -1.3380 -2.4402 33 1 3.7281 -0.6824 -3.3265 34 1 3.8018 -3.3465 -1.8387 35 1 2.4043 -2.6909 -2.7250 36 1 2.6198 -6.1866 -3.8632 37 1 1.6904 -0.2023 -2.1389 38 1 1.6647 -1.7464 -1.2545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879615807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:25 Heat of formation + Delta-G solvation = -92.152275 kcal Electronic energy + Delta-G solvation = -16786.386388 eV Core-core repulsion = 14240.821159 eV Total energy + Delta-G solvation = -2545.565229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96006 -37.49961 -36.66311 -34.83859 -31.89935 -30.54336 -28.07059 -27.63760 -27.00856 -24.71485 -22.90604 -21.64388 -19.50420 -18.52865 -18.11382 -16.70419 -16.54674 -16.42287 -15.57473 -15.28414 -14.94981 -14.67824 -14.48169 -14.22103 -13.91849 -13.26278 -13.19437 -12.92878 -12.83499 -12.72698 -12.64320 -12.44253 -12.26030 -11.95527 -11.64971 -11.58008 -11.51008 -11.34506 -11.03946 -10.81476 -10.58037 -9.15934 -8.24091 -6.37214 1.36885 1.40159 1.48170 2.36932 2.91117 3.08236 3.33685 3.77996 3.87063 3.99861 4.05312 4.28043 4.38188 4.43850 4.61588 4.62117 4.65175 4.80103 4.86081 4.90199 4.91480 4.99963 5.01973 5.05040 5.13252 5.24418 5.32899 5.39013 5.44930 5.51964 5.63751 5.71165 5.97567 6.16602 6.29231 6.80677 6.86499 7.32685 8.86752 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034354 B = 0.006623 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.857080 B = 4226.457405 C = 4481.794582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.126 4.126 4 C -0.102 4.102 5 C 0.116 3.884 6 H 0.084 0.916 7 O -0.582 6.582 8 C 0.024 3.976 9 N -0.519 5.519 10 C 0.070 3.930 11 C 0.003 3.997 12 C -0.544 4.544 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.062 3.938 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.394 0.606 30 H 0.008 0.992 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.069 0.931 34 H -0.016 1.016 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 12.483 8.587 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C -0.183 4.183 4 C -0.139 4.139 5 C 0.057 3.943 6 H 0.101 0.899 7 O -0.389 6.389 8 C -0.105 4.105 9 N -0.242 5.242 10 C -0.057 4.057 11 C -0.035 4.035 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.066 4.066 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.243 0.757 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.003 0.997 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -1.048 12.773 8.780 15.535 hybrid contribution 0.465 -2.031 -1.131 2.371 sum -0.583 10.741 7.649 13.199 Atomic orbital electron populations 1.21807 0.93032 1.01539 1.03098 1.20548 0.96060 0.96665 0.92273 1.21746 1.01735 0.92931 1.01924 1.21598 0.93490 1.00164 0.98663 1.21793 0.94966 0.94605 0.82926 0.89854 1.86458 1.28508 1.78532 1.45433 1.22803 1.00324 0.95244 0.92130 1.62324 1.07984 1.51917 1.02026 1.22107 0.99020 0.93785 0.90816 1.19499 0.94966 0.93723 0.95331 1.21612 1.28943 1.00165 1.07548 0.91757 1.26025 0.95245 0.97641 1.00952 1.70114 1.36169 1.11128 1.40060 0.85468 0.78978 0.77265 0.79163 1.19009 1.20974 1.18940 1.22186 0.87770 0.97701 0.98970 0.90370 0.91654 0.94009 0.92009 0.92492 0.91451 0.94001 0.89574 0.75667 0.97389 0.90305 0.91446 0.91272 0.99732 0.99141 0.92838 0.90968 0.97553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.48 71.98 0.61 -2.56 16 2 C -0.05 -1.46 0.77 -52.13 -0.04 -1.50 16 3 C -0.13 -2.77 8.03 71.98 0.58 -2.19 16 4 C -0.10 -2.83 4.44 30.67 0.14 -2.69 16 5 C 0.12 3.23 3.28 30.65 0.10 3.33 16 6 H 0.08 2.02 6.59 -2.39 -0.02 2.01 16 7 O -0.58 -15.71 13.32 -148.98 -1.98 -17.69 16 8 C 0.02 0.83 4.67 86.32 0.40 1.23 16 9 N -0.52 -18.58 4.14 -896.36 -3.71 -22.29 16 10 C 0.07 2.97 5.30 86.31 0.46 3.43 16 11 C 0.00 0.17 4.27 29.85 0.13 0.30 16 12 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 13 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 14 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 15 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 16 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.06 2.17 3.55 86.33 0.31 2.48 16 21 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.45 6.01 -2.38 -0.01 1.44 16 25 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.39 7.23 9.08 -74.05 -0.67 6.56 16 30 H 0.01 0.33 6.75 -2.39 -0.02 0.32 16 31 H 0.08 2.52 8.06 -2.39 -0.02 2.50 16 32 H 0.07 2.75 8.06 -2.39 -0.02 2.73 16 33 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 34 H -0.02 -0.93 6.68 -2.39 -0.02 -0.95 16 35 H -0.01 -0.57 6.51 -2.39 -0.02 -0.59 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 38 H 0.01 0.26 6.61 -2.39 -0.02 0.25 16 Total: -1.00 -67.25 292.65 0.34 -66.91 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.35 Total: 13.17 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.38 Total: -28.88 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.43 Total: -80.19 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.98 Total: -17.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.25 0.34 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879615807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.242 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds