Wall clock time and date at job start Sun Mar 29 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.09003 * 110.64748 * 59.30070 * 6 4 3 8 8 C 1.54605 * 110.72469 * 296.14684 * 6 4 3 9 9 C 1.53984 * 105.14158 * 219.68439 * 8 6 4 10 10 N 1.47908 * 107.06138 * 358.77581 * 9 8 6 11 11 C 1.46897 * 111.00032 * 145.83915 * 10 9 8 12 12 C 1.50706 * 109.46727 * 69.87883 * 11 10 9 13 13 H 1.07992 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99994 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00181 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46958 * 119.99890 * 16 14 12 19 19 H 1.48496 * 109.47318 * 240.00024 * 16 14 12 20 20 C 1.48731 * 105.93785 * 25.20124 * 10 9 8 21 21 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 26 26 H 1.08996 * 110.30447 * 338.60374 * 8 6 4 27 27 H 1.09000 * 110.30279 * 100.76435 * 8 6 4 28 28 H 1.09000 * 109.91570 * 118.12612 * 9 8 6 29 29 H 1.09001 * 109.92106 * 239.42174 * 9 8 6 30 30 H 1.09002 * 109.46956 * 189.87021 * 11 10 9 31 31 H 1.08994 * 109.47617 * 309.88076 * 11 10 9 32 32 H 0.96990 * 120.00050 * 179.97438 * 15 14 12 33 33 H 1.09009 * 110.83529 * 202.57491 * 20 10 9 34 34 H 1.09000 * 110.58733 * 79.38985 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5860 3.4914 0.8783 8 6 3.5414 3.6870 -1.2968 9 6 4.8038 4.4768 -1.6887 10 7 5.8228 4.2091 -0.6506 11 6 7.1716 4.1810 -1.2318 12 6 7.5658 5.5731 -1.6537 13 1 6.8826 6.3961 -1.5052 14 6 8.7989 5.7959 -2.2291 15 7 9.6311 4.7936 -2.4094 16 14 9.2873 7.5212 -2.7526 17 1 8.1826 8.4638 -2.4426 18 1 10.5103 7.9338 -2.0181 19 1 9.5576 7.5376 -4.2127 20 6 5.4681 2.8908 -0.0604 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 3.2807 2.9766 -2.0813 27 1 2.7111 4.3684 -1.1112 28 1 5.1659 4.1399 -2.6600 29 1 4.5793 5.5429 -1.7224 30 1 7.8795 3.8122 -0.4895 31 1 7.1794 3.5224 -2.1002 32 1 10.4983 4.9502 -2.8145 33 1 5.8899 2.7875 0.9395 34 1 5.8032 2.0791 -0.7061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932649489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:19 Heat of formation + Delta-G solvation = -90.716646 kcal Electronic energy + Delta-G solvation = -15741.457511 eV Core-core repulsion = 13060.121440 eV Total energy + Delta-G solvation = -2681.336070 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56580 -38.04061 -36.45274 -33.22614 -31.99806 -31.03421 -28.61822 -26.69597 -24.03332 -22.62909 -22.01219 -20.08846 -19.98522 -17.58515 -16.73389 -16.43332 -16.03478 -15.39937 -14.60182 -14.03992 -13.95949 -13.31424 -13.10218 -12.92966 -12.73900 -12.26561 -11.98915 -11.80824 -11.67903 -11.17693 -11.05403 -10.96856 -10.69509 -10.62132 -10.57111 -10.27172 -10.13500 -9.84692 -9.18317 -8.43087 -7.39031 -6.01972 -4.03681 2.28417 2.65550 3.31972 3.39221 3.44244 4.43058 4.56285 4.73494 4.78615 4.87661 4.99589 5.08342 5.21785 5.31958 5.36938 5.55021 5.56234 5.71553 5.75670 5.82499 6.01126 6.29874 6.33108 6.45113 6.55286 6.60484 7.14353 7.29752 7.76329 7.82780 7.98984 8.15039 8.48491 9.04358 9.60690 11.09158 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.070922 B = 0.004939 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.706290 B = 5667.717705 C = 5892.441023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.471 3.529 5 O -0.506 6.506 6 C -0.087 4.087 7 H 0.117 0.883 8 C -0.116 4.116 9 C 0.048 3.952 10 N -0.514 5.514 11 C 0.184 3.816 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.051 3.949 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.032 0.968 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.081 0.919 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 -6.499 3.814 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.393 6.393 6 C -0.107 4.107 7 H 0.135 0.865 8 C -0.155 4.155 9 C -0.080 4.080 10 N -0.239 5.239 11 C 0.058 3.942 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.077 4.077 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.013 0.987 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.215 -6.442 4.128 17.929 hybrid contribution 0.477 -0.028 -0.942 1.056 sum -15.738 -6.471 3.186 17.312 Atomic orbital electron populations 1.21794 0.92738 1.02789 1.03522 1.22998 0.95276 0.80699 1.02526 1.86532 1.24912 1.31942 1.84174 1.23832 0.80218 0.92808 0.71771 1.90661 1.60376 1.43185 1.45118 1.22064 0.97624 0.88895 1.02133 0.86461 1.22434 0.99682 0.98730 0.94630 1.22706 0.90169 1.00157 0.94983 1.64929 1.04730 1.24698 1.29541 1.19926 0.83326 0.97503 0.93424 1.21165 1.00838 0.93634 1.38866 0.91766 1.25010 0.96445 0.97242 0.96018 1.69975 1.08624 1.30738 1.44475 0.86424 0.78495 0.84363 0.78042 1.19619 1.21008 1.21132 1.23117 0.89838 0.93455 1.01314 0.91502 0.91460 0.90412 0.91349 0.91355 0.91787 0.90251 0.93539 0.90424 0.94961 0.98692 0.92954 0.90029 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.71 10.22 -39.26 -0.40 -5.11 16 4 C 0.47 7.24 7.14 36.00 0.26 7.50 16 5 O -0.51 -9.16 15.50 -18.75 -0.29 -9.45 16 6 C -0.09 -1.34 3.55 -89.91 -0.32 -1.66 16 7 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 8 C -0.12 -1.73 6.50 -25.37 -0.16 -1.89 16 9 C 0.05 0.92 6.15 -2.76 -0.02 0.90 16 10 N -0.51 -11.24 5.25 -231.72 -1.22 -12.46 16 11 C 0.18 4.88 4.53 -4.97 -0.02 4.86 16 12 C -0.51 -14.35 8.82 -34.44 -0.30 -14.65 16 13 H 0.06 1.79 7.78 -52.49 -0.41 1.38 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 16 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.05 0.97 5.62 -1.79 -0.01 0.96 16 21 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 25 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.06 0.91 7.84 -51.93 -0.41 0.51 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.95 7.57 -51.93 -0.39 0.56 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.03 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.00 -0.13 7.82 -51.93 -0.41 -0.54 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 34 H 0.05 1.06 7.36 -51.93 -0.38 0.67 16 LS Contribution 287.41 15.07 4.33 4.33 Total: -1.00 -31.62 287.41 -7.28 -38.90 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -5.36 Total: -4.23 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.48 Total: -38.73 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.69 Total: -14.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.62 -7.28 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932649489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.812 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds