Wall clock time and date at job start Sun Mar 29 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.09003 * 110.64748 * 59.30070 * 6 4 3 8 8 C 1.54605 * 110.72469 * 296.14684 * 6 4 3 9 9 C 1.53984 * 105.14158 * 219.68439 * 8 6 4 10 10 N 1.47908 * 107.06138 * 358.77581 * 9 8 6 11 11 C 1.46897 * 111.00032 * 145.83915 * 10 9 8 12 12 C 1.50706 * 109.46727 * 69.87883 * 11 10 9 13 13 H 1.07992 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99994 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00181 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46958 * 119.99890 * 16 14 12 19 19 H 1.48496 * 109.47318 * 240.00024 * 16 14 12 20 20 C 1.48731 * 105.93785 * 25.20124 * 10 9 8 21 21 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 26 26 H 1.08996 * 110.30447 * 338.60374 * 8 6 4 27 27 H 1.09000 * 110.30279 * 100.76435 * 8 6 4 28 28 H 1.09000 * 109.91570 * 118.12612 * 9 8 6 29 29 H 1.09001 * 109.92106 * 239.42174 * 9 8 6 30 30 H 1.09002 * 109.46956 * 189.87021 * 11 10 9 31 31 H 1.08994 * 109.47617 * 309.88076 * 11 10 9 32 32 H 0.96990 * 120.00050 * 179.97438 * 15 14 12 33 33 H 1.09009 * 110.83529 * 202.57491 * 20 10 9 34 34 H 1.09000 * 110.58733 * 79.38985 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5860 3.4914 0.8783 8 6 3.5414 3.6870 -1.2968 9 6 4.8038 4.4768 -1.6887 10 7 5.8228 4.2091 -0.6506 11 6 7.1716 4.1810 -1.2318 12 6 7.5658 5.5731 -1.6537 13 1 6.8826 6.3961 -1.5052 14 6 8.7989 5.7959 -2.2291 15 7 9.6311 4.7936 -2.4094 16 14 9.2873 7.5212 -2.7526 17 1 8.1826 8.4638 -2.4426 18 1 10.5103 7.9338 -2.0181 19 1 9.5576 7.5376 -4.2127 20 6 5.4681 2.8908 -0.0604 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 3.2807 2.9766 -2.0813 27 1 2.7111 4.3684 -1.1112 28 1 5.1659 4.1399 -2.6600 29 1 4.5793 5.5429 -1.7224 30 1 7.8795 3.8122 -0.4895 31 1 7.1794 3.5224 -2.1002 32 1 10.4983 4.9502 -2.8145 33 1 5.8899 2.7875 0.9395 34 1 5.8032 2.0791 -0.7061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932649489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:19 Heat of formation + Delta-G solvation = -111.894091 kcal Electronic energy + Delta-G solvation = -15742.375834 eV Core-core repulsion = 13060.121440 eV Total energy + Delta-G solvation = -2682.254393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78333 -39.52238 -37.66362 -35.23514 -33.27059 -32.32921 -30.07061 -28.66980 -25.36521 -24.21598 -23.19967 -21.74983 -21.26799 -18.82272 -18.40889 -17.86954 -17.49848 -16.78506 -16.43356 -15.45582 -15.17283 -14.87520 -14.54714 -14.28900 -13.99597 -13.62905 -13.53397 -12.96848 -12.93507 -12.71596 -12.51550 -12.49065 -12.36886 -12.29147 -11.92679 -11.76918 -11.53929 -11.36579 -11.27870 -10.63218 -9.22254 -8.21898 -6.33048 1.07116 1.42058 1.43018 1.55870 1.58241 2.40818 3.10816 3.21573 3.48833 3.61474 3.87647 4.00495 4.08845 4.13823 4.31773 4.34915 4.45258 4.73675 4.75491 4.84275 4.87367 4.93975 4.99991 5.06905 5.13153 5.14554 5.28092 5.41682 5.62983 5.96056 6.19243 6.42046 6.66077 6.82974 7.37259 8.90207 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.070922 B = 0.004939 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.706290 B = 5667.717705 C = 5892.441023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.352 6.352 4 C 0.479 3.521 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.147 0.853 8 C -0.102 4.102 9 C 0.044 3.956 10 N -0.520 5.520 11 C 0.198 3.802 12 C -0.523 4.523 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.938 5.938 16 Si 0.975 3.025 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.048 3.952 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.023 0.977 29 H 0.084 0.916 30 H 0.002 0.998 31 H -0.037 1.037 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 -5.334 4.080 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.268 6.268 4 C 0.323 3.677 5 O -0.430 6.430 6 C -0.097 4.097 7 H 0.164 0.836 8 C -0.140 4.140 9 C -0.084 4.084 10 N -0.244 5.244 11 C 0.071 3.929 12 C -0.561 4.561 13 H 0.086 0.914 14 C -0.200 4.200 15 N -0.578 5.578 16 Si 0.799 3.201 17 H -0.183 1.183 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.081 4.081 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.136 0.864 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.020 0.980 31 H -0.019 1.019 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.500 -5.278 4.402 19.736 hybrid contribution 1.128 -0.480 -1.005 1.585 sum -17.372 -5.758 3.397 18.614 Atomic orbital electron populations 1.21816 0.89949 1.04406 1.03912 1.23345 0.97396 0.79236 1.02458 1.86518 1.23177 1.33703 1.83447 1.23703 0.80863 0.92220 0.70953 1.90660 1.61351 1.44178 1.46839 1.21960 0.94436 0.89562 1.03695 0.83571 1.22378 0.98413 0.98886 0.94343 1.22774 0.91170 1.01259 0.93194 1.64812 1.03196 1.26373 1.29994 1.19571 0.85653 0.96274 0.91355 1.21469 1.01297 0.94198 1.39111 0.91395 1.26010 0.96311 1.01886 0.95781 1.70114 1.09156 1.33344 1.45202 0.85241 0.78358 0.78755 0.77698 1.18280 1.20437 1.20428 1.23099 0.93227 0.91201 1.00528 0.90946 0.91182 0.88194 0.91266 0.91760 0.91148 0.86446 0.95890 0.89758 0.97994 1.01944 0.92651 0.89765 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.29 71.98 0.74 -0.94 16 2 C 0.05 0.93 6.19 71.98 0.45 1.38 16 3 O -0.35 -8.42 10.22 -51.42 -0.53 -8.95 16 4 C 0.48 14.03 7.14 71.24 0.51 14.54 16 5 O -0.54 -19.51 15.50 21.98 0.34 -19.17 16 6 C -0.08 -2.21 3.55 -10.33 -0.04 -2.25 16 7 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 8 C -0.10 -2.78 6.50 31.47 0.20 -2.57 16 9 C 0.04 1.65 6.15 86.44 0.53 2.18 16 10 N -0.52 -23.06 5.25 -887.01 -4.66 -27.71 16 11 C 0.20 11.02 4.53 85.56 0.39 11.41 16 12 C -0.52 -30.14 8.82 25.60 0.23 -29.91 16 13 H 0.07 3.78 7.78 -2.91 -0.02 3.76 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 16 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.05 1.83 5.62 86.61 0.49 2.32 16 21 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 25 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 26 H 0.07 1.85 7.84 -2.39 -0.02 1.83 16 27 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 29 H 0.08 3.02 8.14 -2.39 -0.02 3.01 16 30 H 0.00 0.12 8.11 -2.39 -0.02 0.10 16 31 H -0.04 -2.25 7.82 -2.39 -0.02 -2.27 16 32 H 0.26 15.23 8.31 -92.72 -0.77 14.46 16 33 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 34 H 0.03 1.15 7.36 -2.39 -0.02 1.13 16 Total: -1.00 -69.93 287.41 2.49 -67.44 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.06 Total: 2.78 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 3.96 Total: -3.51 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -4.37 Total: -85.19 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.19 Total: -28.11 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.93 2.49 -67.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932649489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.452 kcal (2) G-P(sol) polarization free energy of solvation -69.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds