Wall clock time and date at job start Sun Mar 29 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00144 * 2 1 4 4 O 1.20829 * 119.99668 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00128 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.53699 * 57.39571 * 5 3 2 7 7 C 1.54885 * 110.49004 * 294.77607 * 5 3 2 8 8 C 1.54882 * 102.75098 * 203.37969 * 7 5 3 9 9 C 1.54268 * 104.19639 * 37.94348 * 8 7 5 10 10 H 1.09001 * 110.07632 * 95.69904 * 9 8 7 11 11 N 1.46499 * 110.03319 * 217.10651 * 9 8 7 12 12 C 1.46504 * 120.00306 * 57.16362 * 11 9 8 13 13 C 1.36936 * 120.00276 * 237.16839 * 11 9 8 14 14 H 1.08006 * 119.99833 * 340.05439 * 13 11 9 15 15 C 1.38809 * 120.00425 * 160.05382 * 13 11 9 16 16 N 1.31620 * 120.00010 * 344.16275 * 15 13 11 17 17 Si 1.86809 * 119.99992 * 164.16324 * 15 13 11 18 18 H 1.48492 * 109.46900 * 265.41803 * 17 15 13 19 19 H 1.48501 * 109.47062 * 25.41748 * 17 15 13 20 20 H 1.48501 * 109.46529 * 145.41738 * 17 15 13 21 21 C 1.53869 * 106.59737 * 336.38734 * 9 8 7 22 22 H 1.09000 * 109.47071 * 299.99801 * 1 2 3 23 23 H 1.09003 * 109.47258 * 60.00125 * 1 2 3 24 24 H 1.09004 * 109.46749 * 179.97438 * 1 2 3 25 25 H 1.09000 * 110.75751 * 321.69732 * 7 5 3 26 26 H 1.09003 * 110.75307 * 85.06285 * 7 5 3 27 27 H 1.09002 * 110.48987 * 279.26390 * 8 7 5 28 28 H 1.09006 * 110.48971 * 156.62262 * 8 7 5 29 29 H 1.09004 * 109.47061 * 265.43135 * 12 11 9 30 30 H 1.09008 * 109.46771 * 25.42930 * 12 11 9 31 31 H 1.08996 * 109.47126 * 145.42956 * 12 11 9 32 32 H 0.96998 * 119.99918 * 180.02562 * 16 15 13 33 33 H 1.08997 * 110.03244 * 119.28365 * 21 9 8 34 34 H 1.09002 * 110.03516 * 240.71523 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9773 0.7454 -0.8591 7 6 4.1390 0.6963 1.3182 8 6 5.5235 1.3832 1.4199 9 6 5.2742 2.8152 0.9029 10 1 5.0915 3.4887 1.7402 11 7 6.4296 3.2779 0.1301 12 6 6.8880 2.5123 -1.0318 13 6 7.0812 4.4261 0.4938 14 1 6.5852 5.1535 1.1194 15 6 8.3792 4.6551 0.0585 16 7 9.0944 3.6637 -0.4293 17 14 9.1111 6.3706 0.1650 18 1 8.9212 7.0710 -1.1305 19 1 8.4320 7.1324 1.2438 20 1 10.5618 6.2718 0.4665 21 6 4.0299 2.7463 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5096 0.9685 2.1655 26 1 4.2489 -0.3860 1.2493 27 1 6.2507 0.8712 0.7896 28 1 5.8634 1.4052 2.4554 29 1 7.6839 1.8323 -0.7279 30 1 6.0559 1.9384 -1.4399 31 1 7.2650 3.1964 -1.7919 32 1 10.0015 3.8237 -0.7332 33 1 3.2429 3.3856 0.4002 34 1 4.2856 3.0571 -1.0125 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170555328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:09 Heat of formation + Delta-G solvation = -70.676830 kcal Electronic energy + Delta-G solvation = -16220.024195 eV Core-core repulsion = 13539.557117 eV Total energy + Delta-G solvation = -2680.467079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49792 -37.89721 -36.28234 -34.27419 -30.97135 -28.92563 -27.88223 -26.87959 -25.87880 -22.82505 -21.78847 -19.93454 -18.59311 -17.64309 -16.83514 -16.46805 -16.23958 -15.34822 -14.25868 -14.15251 -13.61205 -13.29524 -12.94709 -12.60466 -12.34515 -12.11534 -11.74403 -11.26534 -10.96683 -10.80303 -10.73843 -10.71698 -10.61420 -10.42447 -10.29785 -10.09784 -10.01161 -9.72697 -9.70828 -8.49061 -6.73566 -5.68826 -3.10782 2.33822 2.81441 3.41812 3.48584 3.49784 4.53324 4.79193 4.94147 5.02686 5.06864 5.11158 5.33007 5.46251 5.49375 5.70372 5.86222 5.96587 6.06458 6.21029 6.23470 6.29220 6.45421 6.54392 6.69445 6.78551 6.99989 7.07587 7.42792 7.76002 7.85727 7.87436 8.43223 9.28158 9.92825 10.40883 11.36620 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.058313 B = 0.005957 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.048388 B = 4699.282364 C = 4865.684990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.509 6.509 5 C -0.085 4.085 6 H 0.108 0.892 7 C -0.108 4.108 8 C -0.138 4.138 9 C 0.175 3.825 10 H 0.067 0.933 11 N -0.594 5.594 12 C 0.163 3.837 13 C -0.254 4.254 14 H 0.069 0.931 15 C 0.000 4.000 16 N -0.908 5.908 17 Si 0.903 3.097 18 H -0.289 1.289 19 H -0.280 1.280 20 H -0.292 1.292 21 C -0.129 4.129 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.028 0.972 30 H -0.001 1.001 31 H 0.042 0.958 32 H 0.251 0.749 33 H 0.074 0.926 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 -8.270 1.119 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.396 6.396 5 C -0.105 4.105 6 H 0.126 0.874 7 C -0.146 4.146 8 C -0.178 4.178 9 C 0.066 3.934 10 H 0.086 0.914 11 N -0.315 5.315 12 C 0.018 3.982 13 C -0.383 4.383 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.553 5.553 17 Si 0.733 3.267 18 H -0.216 1.216 19 H -0.205 1.205 20 H -0.219 1.219 21 C -0.168 4.168 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.637 -7.942 1.045 14.962 hybrid contribution 0.233 0.890 -0.064 0.923 sum -12.404 -7.051 0.981 14.302 Atomic orbital electron populations 1.23212 0.77144 1.03297 1.02357 1.86550 1.22850 1.34060 1.84290 1.24110 0.92425 0.80911 0.71439 1.90631 1.67177 1.36414 1.45368 1.22015 0.85357 1.01327 1.01779 0.87416 1.22428 0.97831 0.99830 0.94519 1.22975 0.94968 0.98252 1.01583 1.20953 0.86762 0.93120 0.92530 0.91450 1.44062 1.31616 1.26827 1.28999 1.20723 0.93938 0.94727 0.88781 1.19289 0.94789 0.94822 1.29413 0.91280 1.24924 0.95764 0.97422 1.01667 1.70097 1.09129 1.29059 1.47041 0.86258 0.78218 0.84452 0.77767 1.21625 1.20494 1.21883 1.22863 0.99406 0.91624 1.02943 0.92102 0.92133 0.88405 0.91670 0.91103 0.90726 0.91899 0.95342 0.98220 0.93958 0.93862 0.90771 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.75 10.57 -39.26 -0.41 -5.16 16 3 C 0.47 7.15 7.25 36.00 0.26 7.41 16 4 O -0.51 -9.04 15.17 -18.75 -0.28 -9.32 16 5 C -0.09 -1.30 3.36 -90.11 -0.30 -1.60 16 6 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 7 C -0.11 -1.54 6.32 -24.74 -0.16 -1.69 16 8 C -0.14 -2.42 6.42 -25.08 -0.16 -2.58 16 9 C 0.18 3.57 3.38 -66.81 -0.23 3.34 16 10 H 0.07 1.40 7.88 -51.93 -0.41 0.99 16 11 N -0.59 -14.75 2.80 -172.20 -0.48 -15.23 16 12 C 0.16 3.95 7.44 59.85 0.45 4.40 16 13 C -0.25 -6.99 9.62 -15.06 -0.14 -7.14 16 14 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 15 C 0.00 0.00 5.04 -17.43 -0.09 -0.08 16 16 N -0.91 -26.49 10.70 55.49 0.59 -25.89 16 17 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C -0.13 -2.33 5.34 -25.61 -0.14 -2.47 16 22 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 23 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.74 7.34 -51.93 -0.38 0.36 16 30 H 0.00 -0.01 7.00 -51.92 -0.36 -0.38 16 31 H 0.04 1.12 7.17 -51.93 -0.37 0.75 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.37 6.85 -51.93 -0.36 1.02 16 34 H 0.08 1.48 7.09 -51.93 -0.37 1.11 16 LS Contribution 278.18 15.07 4.19 4.19 Total: -1.00 -30.80 278.18 -5.98 -36.78 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.11 Total: -3.35 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 0.56 Total: 0.98 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.11 Total: -41.13 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.70 Total: -14.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.80 -5.98 -36.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170555328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.900 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds