Wall clock time and date at job start Sun Mar 29 2020 21:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34222 * 116.99995 * 2 1 4 4 O 1.20820 * 120.00458 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99876 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47403 * 59.99655 * 5 3 2 7 7 C 1.53002 * 109.47104 * 299.99893 * 5 3 2 8 8 C 1.53000 * 109.47299 * 179.97438 * 7 5 3 9 9 C 1.53007 * 109.46623 * 60.00146 * 8 7 5 10 10 C 1.52995 * 109.47210 * 299.99468 * 9 8 7 11 11 H 1.09000 * 109.47473 * 300.01127 * 10 9 8 12 12 N 1.46499 * 109.47175 * 180.02562 * 10 9 8 13 13 C 1.36932 * 119.99549 * 85.00450 * 12 10 9 14 14 H 1.08003 * 120.00354 * 0.02562 * 13 12 10 15 15 C 1.38817 * 120.00011 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00154 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99635 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99668 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99848 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99841 * 17 15 13 21 21 C 1.52996 * 109.47283 * 180.02562 * 5 3 2 22 22 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46766 * 299.99914 * 1 2 3 24 24 H 1.08997 * 109.47049 * 59.99864 * 1 2 3 25 25 H 1.09003 * 109.46739 * 300.00381 * 7 5 3 26 26 H 1.09000 * 109.46823 * 59.99428 * 7 5 3 27 27 H 1.08995 * 109.46939 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47014 * 300.00247 * 8 7 5 29 29 H 1.09009 * 109.46254 * 180.02562 * 9 8 7 30 30 H 1.08996 * 109.47344 * 60.00302 * 9 8 7 31 31 H 0.96993 * 120.00302 * 265.00414 * 12 10 9 32 32 H 0.96998 * 119.99442 * 179.97438 * 16 15 13 33 33 H 1.09007 * 109.47517 * 59.99404 * 21 5 3 34 34 H 1.09005 * 109.47362 * 300.00155 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8907 7 6 4.1139 0.5809 1.2483 8 6 5.6419 0.6604 1.2475 9 6 6.0761 2.1275 1.2473 10 6 5.5287 2.8213 -0.0016 11 1 5.9177 2.3270 -0.8918 12 7 5.9451 4.2259 -0.0021 13 6 7.1697 4.5767 -0.5042 14 1 7.8285 3.8181 -0.9003 15 6 7.5641 5.9077 -0.5052 16 7 8.7410 6.2450 -0.9884 17 14 6.4244 7.2199 0.1792 18 1 5.5537 7.7354 -0.9078 19 1 7.2315 8.3345 0.7373 20 1 5.5818 6.6333 1.2521 21 6 4.0002 2.7419 0.0002 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.7245 1.0749 2.1385 26 1 3.8047 -0.4643 1.2483 27 1 6.0318 0.1665 2.1374 28 1 6.0308 0.1662 0.3572 29 1 7.1648 2.1841 1.2462 30 1 5.6872 2.6217 2.1375 31 1 5.3533 4.9073 0.3533 32 1 9.0164 7.1751 -0.9893 33 1 3.6108 3.2356 0.8906 34 1 3.6101 3.2367 -0.8893 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172587960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:04 Heat of formation + Delta-G solvation = -113.374598 kcal Electronic energy + Delta-G solvation = -16080.529101 eV Core-core repulsion = 13398.210508 eV Total energy + Delta-G solvation = -2682.318593 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.74032 -39.43206 -37.48915 -35.98002 -33.45539 -32.10917 -30.22701 -28.52995 -25.46322 -24.68423 -22.82805 -21.61734 -20.95169 -19.57941 -18.51395 -17.76031 -17.38252 -16.53530 -16.03774 -15.49933 -15.13352 -15.04352 -14.64272 -14.43083 -14.17822 -13.61938 -13.54015 -13.05570 -12.99727 -12.83552 -12.37839 -12.26214 -12.05813 -11.82148 -11.78395 -11.65385 -11.51962 -11.40068 -11.09592 -10.86497 -9.30176 -8.02036 -5.34454 1.14761 1.37447 1.39251 1.46362 1.73064 2.48126 3.29446 3.42588 3.64891 3.78659 3.99224 4.25251 4.29334 4.32798 4.34394 4.44619 4.47983 4.55783 4.60054 4.72207 4.76494 5.07741 5.12079 5.20301 5.22920 5.34422 5.36356 5.53223 5.62584 5.79279 6.22900 6.71537 7.08392 7.85686 8.03577 9.19564 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.006586 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.020723 B = 4250.332292 C = 4739.000425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.541 6.541 5 C -0.070 4.070 6 H 0.129 0.871 7 C -0.100 4.100 8 C -0.106 4.106 9 C -0.133 4.133 10 C 0.178 3.822 11 H 0.052 0.948 12 N -0.755 5.755 13 C -0.224 4.224 14 H 0.062 0.938 15 C -0.062 4.062 16 N -0.984 5.984 17 Si 0.949 3.051 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.256 1.256 21 C -0.102 4.102 22 H 0.135 0.865 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.362 0.638 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 -16.268 4.824 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.089 4.089 6 H 0.147 0.853 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.173 4.173 10 C 0.070 3.930 11 H 0.070 0.930 12 N -0.398 5.398 13 C -0.355 4.355 14 H 0.080 0.920 15 C -0.254 4.254 16 N -0.635 5.635 17 Si 0.777 3.223 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.181 1.181 21 C -0.140 4.140 22 H 0.153 0.847 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.648 -16.015 4.722 22.883 hybrid contribution -0.409 1.589 0.142 1.647 sum -16.057 -14.426 4.864 22.127 Atomic orbital electron populations 1.23554 0.75049 1.05758 1.02323 1.86503 1.24753 1.32402 1.83600 1.24093 0.92434 0.81157 0.70885 1.90659 1.67990 1.37664 1.46786 1.21075 0.85833 0.97962 1.04079 0.85302 1.21517 0.95995 1.01542 0.94667 1.21473 0.94531 0.94944 1.03460 1.22131 1.00085 0.96517 0.98616 1.20411 0.91935 0.83765 0.96871 0.93013 1.42852 1.17542 1.04635 1.74745 1.19051 0.93006 0.92802 1.30682 0.92003 1.25415 0.98301 0.99243 1.02422 1.69868 1.22077 1.17455 1.54055 0.85495 0.78630 0.79293 0.78882 1.20778 1.22148 1.18124 1.21597 0.95400 0.94679 1.02346 0.84707 0.92165 0.92310 0.91780 0.88171 0.89877 0.90721 0.93876 0.93028 0.80524 0.93408 0.92134 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.33 10.47 -51.34 -0.54 -7.86 16 3 C 0.47 12.04 7.26 71.24 0.52 12.56 16 4 O -0.54 -17.60 15.73 21.98 0.35 -17.26 16 5 C -0.07 -1.67 2.63 -11.54 -0.03 -1.70 16 6 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 7 C -0.10 -1.97 5.13 30.60 0.16 -1.81 16 8 C -0.11 -2.34 5.92 30.60 0.18 -2.16 16 9 C -0.13 -4.31 5.50 30.59 0.17 -4.15 16 10 C 0.18 6.60 2.77 45.01 0.12 6.72 16 11 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 12 N -0.76 -35.92 4.93 -322.86 -1.59 -37.51 16 13 C -0.22 -12.88 10.41 84.04 0.87 -12.00 16 14 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 15 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 16 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 17 Si 0.95 46.91 27.73 68.60 1.90 48.82 16 18 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 21 C -0.10 -3.23 3.96 30.61 0.12 -3.11 16 22 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 0.92 8.13 -2.39 -0.02 0.91 16 24 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 1.50 8.11 -2.39 -0.02 1.48 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.36 16.96 5.66 -92.71 -0.52 16.44 16 32 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 33 H 0.06 2.00 8.10 -2.38 -0.02 1.98 16 34 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 Total: -1.00 -71.44 280.89 4.69 -66.75 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.49 Total: 17.82 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 3.78 Total: -7.32 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -1.29 Total: -100.94 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.19 Total: -25.12 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.82 kcal Total: -71.44 4.69 -66.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172587960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.625 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds