Wall clock time and date at job start Sun Mar 29 2020 22:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00058 * 2 1 4 4 H 1.08003 * 120.00360 * 321.72222 * 3 2 1 5 5 C 1.38816 * 120.00026 * 141.71677 * 3 2 1 6 6 N 1.31613 * 119.99935 * 157.48993 * 5 3 2 7 7 Si 1.86797 * 120.00037 * 337.49610 * 5 3 2 8 8 H 1.48502 * 109.47196 * 95.65863 * 7 5 3 9 9 H 1.48498 * 109.47267 * 215.65590 * 7 5 3 10 10 H 1.48495 * 109.47243 * 335.65808 * 7 5 3 11 11 C 1.46499 * 119.99846 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46870 * 90.00624 * 11 2 1 13 13 H 1.09003 * 109.54167 * 304.82076 * 12 11 2 14 14 C 1.53177 * 109.54829 * 64.99597 * 12 11 2 15 15 C 1.53085 * 109.21676 * 176.81662 * 14 12 11 16 16 O 1.42912 * 109.41362 * 302.48976 * 15 14 12 17 17 C 1.42907 * 114.14919 * 61.06201 * 16 15 14 18 18 C 1.53006 * 109.47612 * 178.89298 * 17 16 15 19 19 C 1.52992 * 109.49302 * 58.86347 * 17 16 15 20 20 C 1.53095 * 109.41499 * 298.87333 * 17 16 15 21 21 H 1.09000 * 109.47087 * 265.67053 * 1 2 3 22 22 H 1.09003 * 109.47101 * 25.66874 * 1 2 3 23 23 H 1.09003 * 109.47252 * 145.66852 * 1 2 3 24 24 H 0.97004 * 120.00536 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.47707 * 330.00766 * 11 2 1 26 26 H 1.09005 * 109.47382 * 209.99773 * 11 2 1 27 27 H 1.09003 * 109.52139 * 296.76021 * 14 12 11 28 28 H 1.08999 * 109.51676 * 56.87658 * 14 12 11 29 29 H 1.08994 * 109.48389 * 62.40897 * 15 14 12 30 30 H 1.09003 * 109.48023 * 182.44553 * 15 14 12 31 31 H 1.08997 * 109.46431 * 179.97438 * 18 17 16 32 32 H 1.08994 * 109.47137 * 299.94008 * 18 17 16 33 33 H 1.09001 * 109.47072 * 59.94490 * 18 17 16 34 34 H 1.09006 * 109.47022 * 300.05255 * 19 17 16 35 35 H 1.09002 * 109.47522 * 60.04858 * 19 17 16 36 36 H 1.08998 * 109.47058 * 180.02562 * 19 17 16 37 37 H 1.09000 * 109.52112 * 297.70688 * 20 17 16 38 38 H 1.08996 * 109.57613 * 177.54965 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7839 2.0207 -0.5794 5 6 3.3139 1.3151 0.7448 6 7 4.1981 2.2376 0.4292 7 14 3.6259 0.1797 2.1949 8 1 4.4699 -0.9612 1.7577 9 1 4.3252 0.9295 3.2692 10 1 2.3308 -0.3318 2.7107 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 1 1.5065 -1.7591 -1.9811 14 6 3.3833 -0.7069 -2.1287 15 6 3.6971 -1.1976 -3.5444 16 8 4.2832 -2.4993 -3.4769 17 6 3.4396 -3.4905 -2.8870 18 6 4.1579 -4.8414 -2.8938 19 6 2.1413 -3.5988 -3.6890 20 6 3.1169 -3.0911 -1.4447 21 1 -0.3633 -0.0776 1.0247 22 1 -0.3633 0.9263 -0.4452 23 1 -0.3634 -0.8486 -0.5796 24 1 5.0118 2.3277 0.9493 25 1 1.6084 -2.0283 0.5146 26 1 3.1499 -1.1382 0.5143 27 1 2.8950 0.2662 -2.1802 28 1 4.3089 -0.6201 -1.5596 29 1 2.7762 -1.2444 -4.1254 30 1 4.3938 -0.5086 -4.0218 31 1 3.5144 -5.5972 -2.4434 32 1 4.3875 -5.1256 -3.9207 33 1 5.0830 -4.7640 -2.3226 34 1 1.6299 -2.6362 -3.6844 35 1 2.3711 -3.8831 -4.7159 36 1 1.4979 -4.3546 -3.2385 37 1 4.0376 -3.0534 -0.8625 38 1 2.4385 -3.8229 -1.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207360697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:10 Heat of formation + Delta-G solvation = -36.325441 kcal Electronic energy + Delta-G solvation = -17331.347231 eV Core-core repulsion = 14788.202835 eV Total energy + Delta-G solvation = -2543.144396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64734 -36.23048 -33.37358 -32.70936 -31.44110 -28.31236 -27.14642 -26.49386 -25.48573 -22.89929 -21.44373 -20.19326 -18.68329 -16.72610 -15.84868 -15.61263 -14.96543 -14.45619 -14.16775 -13.99043 -13.42321 -12.92032 -12.80717 -12.53222 -12.30683 -12.10442 -11.93532 -11.68753 -11.58653 -11.15604 -11.09437 -10.77735 -10.71246 -10.65357 -10.42661 -10.01548 -9.65488 -9.60513 -9.35386 -8.91303 -8.46763 -6.75238 -5.98200 -3.37816 3.32809 3.47827 3.53621 4.12442 4.54823 4.88927 5.06605 5.17340 5.27718 5.35446 5.44294 5.66054 5.71906 5.78891 5.84561 5.87473 5.88175 5.94212 6.05391 6.12588 6.19152 6.30604 6.31943 6.41097 6.45895 6.56508 6.63861 6.71775 6.74817 6.86864 7.11099 7.33586 7.72606 8.08482 8.38800 9.01816 9.74004 10.16628 11.17281 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.009510 C = 0.009174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.451083 B = 2943.543007 C = 3051.509028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.613 5.613 3 C -0.266 4.266 4 H 0.077 0.923 5 C 0.040 3.960 6 N -0.898 5.898 7 Si 0.873 3.127 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.272 1.272 11 C 0.144 3.856 12 C -0.101 4.101 13 H 0.062 0.938 14 C -0.132 4.132 15 C 0.058 3.942 16 O -0.381 6.381 17 C 0.113 3.887 18 C -0.136 4.136 19 C -0.176 4.176 20 C -0.139 4.139 21 H 0.004 0.996 22 H 0.044 0.956 23 H 0.025 0.975 24 H 0.262 0.738 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -11.762 -6.107 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.337 5.337 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.161 4.161 6 N -0.539 5.539 7 Si 0.703 3.297 8 H -0.213 1.213 9 H -0.230 1.230 10 H -0.197 1.197 11 C 0.018 3.982 12 C -0.122 4.122 13 H 0.080 0.920 14 C -0.170 4.170 15 C -0.018 4.018 16 O -0.301 6.301 17 C 0.073 3.927 18 C -0.193 4.193 19 C -0.234 4.234 20 C -0.177 4.177 21 H 0.022 0.978 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.753 -11.687 -6.122 13.478 hybrid contribution 0.036 -0.473 1.040 1.143 sum -2.717 -12.160 -5.082 13.457 Atomic orbital electron populations 1.21058 0.84861 0.98869 0.97225 1.44046 1.00621 1.02089 1.86904 1.18704 1.06190 0.90817 1.23706 0.90533 1.25428 0.96931 0.96218 0.97504 1.69862 1.08704 1.35858 1.39437 0.86989 0.77901 0.80229 0.84533 1.21349 1.23012 1.19654 1.21180 0.96146 0.87511 0.93376 1.21755 0.97878 0.92876 0.99691 0.91960 1.22054 1.00309 1.00548 0.94070 1.22708 0.97774 0.83455 0.97891 1.87881 1.42418 1.18328 1.81477 1.21388 0.90113 0.88845 0.92341 1.21745 1.00787 0.94563 1.02221 1.22421 0.97998 1.02694 1.00244 1.22236 1.01260 0.98120 0.96092 0.97775 0.93746 0.95669 0.92782 0.94681 0.92886 0.88475 0.91748 0.93829 0.89569 0.91548 0.92290 0.92013 0.91538 0.92469 0.92001 0.91532 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.51 10.70 59.85 0.64 3.16 16 2 N -0.61 -14.50 2.35 -181.11 -0.43 -14.92 16 3 C -0.27 -7.26 7.92 -15.06 -0.12 -7.38 16 4 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 5 C 0.04 1.14 5.30 -17.43 -0.09 1.04 16 6 N -0.90 -26.90 13.97 55.49 0.78 -26.12 16 7 Si 0.87 22.45 25.08 -169.99 -4.26 18.19 16 8 H -0.29 -7.18 6.68 56.52 0.38 -6.80 16 9 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 10 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.14 3.12 4.04 -4.04 -0.02 3.10 16 12 C -0.10 -1.90 2.17 -90.44 -0.20 -2.10 16 13 H 0.06 1.13 6.63 -51.93 -0.34 0.79 16 14 C -0.13 -2.70 4.87 -26.60 -0.13 -2.82 16 15 C 0.06 1.00 6.52 37.20 0.24 1.24 16 16 O -0.38 -6.64 10.23 -35.23 -0.36 -7.00 16 17 C 0.11 1.68 1.11 -90.57 -0.10 1.58 16 18 C -0.14 -1.69 8.85 37.16 0.33 -1.36 16 19 C -0.18 -2.30 7.94 37.15 0.29 -2.01 16 20 C -0.14 -2.27 4.21 -26.59 -0.11 -2.38 16 21 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 22 H 0.04 0.87 8.00 -51.93 -0.42 0.45 16 23 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.05 1.28 3.38 -51.93 -0.18 1.10 16 27 H 0.10 2.24 6.58 -51.93 -0.34 1.90 16 28 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.04 0.69 6.35 -51.93 -0.33 0.36 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.93 4.98 -51.93 -0.26 0.67 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -29.55 286.03 -5.74 -35.28 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.52 Total: -1.81 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.74 Total: -7.93 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.35 Total: -41.04 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.36 Total: -7.00 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.26 Total: 18.19 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.55 -5.74 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207360697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.042 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds